Gh188, Gh188 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh188
Genbank IDDQ908130
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908130
Source Typegenomic
Repeat MotifCT(15)
Primer 1Gh188_F: CGCAACTGTAAGCTATCTCTTATGG
Primer 2Gh188_R: TGCTTGTGGGAGTAATGGTG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908130
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:54307568..54307731 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A12chromosomeA12:92698199..92698377 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:51062714..51062877 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018213.1chromosomeCM018213.1:89696682..89696848 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:8748034..8748197 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_12chromosomeKI_12:6801675..6801834 -Gossypioides kirkii genome ISU_v3n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:10384341..10384518 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_12chromosomeD10_12:46072371..46072536 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016625.1chromosomeCM016625.1:13596385..13596554 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr8chromosomeDt_chr8:47239365..47239528 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr3chromosomeAt_chr3:19462753..19462931 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:50667099..50667262 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A12chromosomeA12:78215430..78215608 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:53522279..53522442 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:97459351..97459529 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:52361264..52361427 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:97852412..97852590 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:53153383..53153546 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:95569877..95570055 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:51374346..51374509 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A12chromosomeA12:92498922..92499100 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt12chromosomeDt12:54007410..54007587 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Dt12chromosomeDt12:54005512..54005689 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold27504supercontigscaffold27504:133802..133979 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold27504supercontigscaffold27504:131904..132081 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3032supercontigscaffold3032:100779..100957 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3032supercontigscaffold3032:108250..108427 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D12chromosomeGbar_D12:50394366..50394529 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:92333336..92333502 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:51516770..51516933 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A12chromosomeA12:91725170..91725336 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:51470160..51470323 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017621.1chromosomeCM017621.1:92869194..92869372 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:54308668..54308831 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017647.1chromosomeCM017647.1:96415814..96415992 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:52143757..52143920 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:92041943..92042109 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:53593066..53593229 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A12chromosomeA12:99095483..99095661 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:99820997..99821178 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:106960130..106960307 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:49036710..49036873 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:78322155..78322324 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:49357934..49358121 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:38208036..38208199 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:36042152..36042317 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:50796014..50796179 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:34967554..34967717 +Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:27527631..27527804 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:33836804..33836963 +Gossypium lobatum (D7) genome ISU_v1n/a
E12chromosomeE12:103174383..103174546 +Gossypium stocksii (E1) genome NSF_v1n/a
F12chromosomeF12:82202302..82202478 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr12chromosomeChr12:3652842..3653009 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908130DQ908130Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch12_At.12N/A103.25Gh188View
2CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch12_At.12N/A102.8Gh188View
3TM-1 x Hai-7124, BC1 (2012)AD_ch12_At.12N/A101.8Gh188-180View
Sequence
>Gh188 ID=Gh188; Name=Gh188; organism=Gossypium hirsutum; type=genetic_marker; length=179bp
CGCAACTGTAAGCTATCTCTTATGGCTCATCTATTAGGGCTTTTTACTAT
AGTTTTGGTGAAGATCCCCATTTTCTAGATTGTTAAGGTAACACCAAAAA
ATCATAATAACAATTGTAGTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCT
CTGATCTTTCACCATTACTCCCACAAGCA