Gh184, Gh184 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh184
Genbank IDDQ908126
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908126
Source Typegenomic
Repeat MotifGAA(5)
Primer 1Gh184_F: CCAGTTAACTTGCCACATTGG
Primer 2Gh184_R: AGACATGGAGTTTCAATGGCA
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908126
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A09chromosomeA09:9086170..9086370 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018210.1chromosomeCM018210.1:8694952..8695165 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:9488762..9488962 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr6chromosomeAt_chr6:11006327..11006527 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A09chromosomeA09:8763301..8763501 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A09chromosomeGhir_A09:9022645..9022845 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:2939527..2939671 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A09chromosomeA09:8680864..8681064 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:9051051..9051251 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:9215842..9216042 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At09chromosomeAt09:9655825..9656038 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold24359supercontigscaffold24359:6233..6380 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold155supercontigscaffold155:423661..423874 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Scaffold3746supercontigScaffold3746:86357..86504 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:8787367..8787580 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A09chromosomeA09:8766078..8766291 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017618.1chromosomeCM017618.1:8840899..8841099 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017644.1chromosomeCM017644.1:8826088..8826278 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017696.1chromosomeCM017696.1:8977985..8978198 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A09chromosomeA09:9193983..9194183 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:8865741..8865924 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:10035416..10035617 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
F12chromosomeF12:63510754..63511025 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908126DQ908126Gossypium hirsutumsequence_feature


Sequence
>Gh184 ID=Gh184; Name=Gh184; organism=Gossypium hirsutum; type=genetic_marker; length=201bp
CCAGTTAACTTGCCACATTGGATGAAGAAATTGAAAAAAAACACTAAAAA
AACCCTTTAACAGAGAAGAAAAAGAAGAAGAAGAAGAAAAAGAAGAAGAA
GAAGAGGCAGTAGCAGCAGAAGAAGAATAGACTGTAAAAAGAAAAGTCTT
ATTTGCATAATTTGGAGGGGTTTCATTCTTTGCCATTGAAACTCCATGTC
T