Gh180, Gh180 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh180
Genbank IDDQ908122
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908122
Source Typegenomic
Repeat MotifGAA(5)
Primer 1Gh180_F: AGAAGAAGTCATTGTTGAGGCA
Primer 2Gh180_R: GGTTCTTCTTTCTTAGCTCCTTCAC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908122
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:54018602..54018811 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A04chromosomeA04:80103311..80103445 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018218.1chromosomeCM018218.1:51911151..51911360 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018205.1chromosomeCM018205.1:78695110..78695241 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:2238444..2238578 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:2824624..2824755 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_04chromosomeD10_04:50183888..50184022 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016617.1chromosomeCM016617.1:125037041..125037178 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr12chromosomeDt_chr12:1295569..1295778 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold3985_D04supercontigscaffold3985_D04:4779..4988 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold7916supercontigscaffold7916:5297..5431 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:53820941..53821150 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A04chromosomeGhir_A04:82741050..82741184 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:54521970..54522179 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:85450707..85450841 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:53664223..53664432 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:82987258..82987392 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:51692092..51692301 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A04chromosomeA04:78660119..78660253 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold4058supercontigscaffold4058:98980..99111 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3621supercontigscaffold3621:106005..106214 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D04chromosomeGbar_D04:49968812..49969021 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A04chromosomeGbar_A04:79171164..79171295 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:55001854..55002063 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A04chromosomeA04:79573967..79574098 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:51991094..51991306 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017613.1chromosomeCM017613.1:81207531..81207662 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:54800410..54800619 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017639.1chromosomeCM017639.1:89732273..89732404 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:52229177..52229386 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017691.1chromosomeCM017691.1:79707126..79707257 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:55601773..55601982 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A04chromosomeA04:86751472..86751606 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:106682803..106682934 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:108461689..108461820 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr04chromosomeChr04:2194361..2194495 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_02chromosomeB_02:2675136..2675267 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr12chromosomeChr12:51917056..51917193 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_12chromosomeChr_12:22205633..22205764 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:51809009..51809143 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
E04chromosomeE04:103119392..103119520 +Gossypium stocksii (E1) genome NSF_v1n/a
F04chromosomeF04:88986965..88987096 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr04chromosomeChr04:175338000..175338131 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr12chromosomeGh180:1..334 .
Chr12:33225293..33225623 +		n/a
Chr12chromosomeGh180:1..334 .
Chr12:561777..562107 -		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908122DQ908122Gossypium hirsutumsequence_feature


Sequence
>Gh180 ID=Gh180; Name=Gh180; organism=Gossypium hirsutum; type=genetic_marker; length=138bp
AGAAGAAGTCATTGTTGAGGCAAAAACAATGGTTGAAGCTGAAAAGCAAA
AGAAAAAGGAAGAAGAAGAAGAAGAGGAAGAAGATGAGATTATTGTTTTG
GCTGAAAAGAAAAGTGAAGGAGCTAAGAAAGAAGAACC