Gh177, Gh177 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	Gh177
Genbank ID	DQ908119
Type	SSR
Species	Gossypium hirsutum
Germplasm	Tamcot Sphinx
Source Sequence	DQ908119
Source Type	genomic
Repeat Motif	AG(6)
Primer 1	Gh177_F: GAGATTGATTCGAGATCGATACC
Primer 2	Gh177_R: CTTGTTAAGGTATTCCTCCAGACA
Publication	[view all]
Comment	Primer data obtained in 2008-01 from Hoffman, Steve M.

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	DQ908119

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
CM018205.1	chromosome	CM018205.1:3126076..3126304 +	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1	n/a
Gbar_A04	chromosome	Gbar_A04:3231384..3231612 +	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
A04	chromosome	A04:3069213..3069441 +	Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1	n/a
CM017696.1	chromosome	CM017696.1:49373949..49374177 +	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
CM017691.1	chromosome	CM017691.1:3286845..3287073 +	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
Chr04	chromosome	Chr04:92385167..92385395 +	Gossypium herbaceum (A1) 'Mutema' genome WHU_v1	n/a

Publications


Year	Publication
2007	Hoffman S, Yu J, Grum D, Xiao J, Kohel R, Pepper A. Identification of 700 New Microsatellite Loci from Cotton (G. hirsutum L.). Journal of cotton science. 2007; 11(4):208-241

Germplasm


Stock Name	Type
Tamcot Sphinx	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
DQ908119	DQ908119	Gossypium hirsutum	sequence_feature

Sequence

>Gh177 ID=Gh177; Name=Gh177; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
GAGATTGATTCGAGATCGATACCTTTTGCATTCATTTGCATTCAAAATTA
TAAAAATACCCTAATTAGCTAAAGATATTAAACTGAGAAAGAAAAAGAGA
GAGAGAGAAGAGGCTCACCGCTGAGTGCAAAAGAACCCGAATGGGAATTA
CCTACATTCCCCTACATATCCCTGACTTTTGTGTCTGGAGGAATACCTTA
ACAAG

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Gh177, Gh177 (genetic_marker) Gossypium hirsutum