Gh174, Gh174 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh174
Genbank IDDQ908116
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908116
Source Typegenomic
Repeat MotifGT(11)
Primer 1Gh174_F: CCTTCACTCATACAGTTGCAGAAC
Primer 2Gh174_R: CCTGAGCATGATTGTCTCTGG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908116
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:63080901..63081059 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:58705503..58705664 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:57560322..57560484 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_13chromosomeD10_13:59502636..59502817 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:159063346..159063511 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr4chromosomeAt_chr4:37892626..37892784 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:58845143..58845301 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:61625357..61625515 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:62825920..62826078 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:62204600..62204758 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:58462854..58463015 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:58626440..58626599 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:59597696..59597857 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:59667586..59667747 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:62895101..62895264 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:59366252..59366403 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:63333935..63334093 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:57535512..57535665 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:2569773..2569925 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:58835733..58835878 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:43999352..43999889 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr13chromosomeChr13:61775302..61775463 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:32089514..32089669 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:40450009..40450254 +Gossypium lobatum (D7) genome ISU_v1n/a
E13chromosomeE13:113759518..113759678 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr13chromosomeChr13:1505668..1505831 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr13chromosomeGh174:1..651 .
Chr13:57074383..57075035 +		n/a
Chr13chromosomeGh174:1..651 .
Chr13:1730661..1731336 +		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908116DQ908116Gossypium hirsutumsequence_feature


Sequence
>Gh174 ID=Gh174; Name=Gh174; organism=Gossypium hirsutum; type=genetic_marker; length=162bp
CCTTCACTCATACAGTTGCAGAACTTGATTGATAATCCCTTTAACTAATT
GGGACTTTCTTTTTTTTCTTGTTTTTTTTTTGTGTGTGTGTGTGTGTGTG
TGTGCAGGCATTTGAGGATGATGGTTCAGATGTTGAATCCCCCAGAGACA
ATCATGCTCAGG