Gh165, Gh165 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh165
Genbank IDDQ908107
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908107
Source Typegenomic
Repeat MotifGAA(5)
Primer 1Gh165_F: TGTTGAGATAAGGAACTTGACACA
Primer 2Gh165_R: GGGATGTTACACTTTGGCTAGAG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908107
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:2650301..2650521 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:2553267..2553487 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:2770180..2770421 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_09chromosomeD10_09:42749098..42749321 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr2chromosomeDt_chr2:11869113..11869333 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:2692775..2692995 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:2696050..2696270 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:2834582..2834785 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:2691973..2692193 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:2619117..2619337 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:2480145..2480365 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt09chromosomeDt09:3092872..3093092 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1708supercontigscaffold1708:43912..44132 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7644supercontigscaffold7644:145860..146063 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D09chromosomeGbar_D09:2556733..2556953 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:2738844..2739047 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:2632834..2633054 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:2750557..2750792 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017631.1chromosomeCM017631.1:2728373..2728608 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:2578856..2579082 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:2666809..2667029 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:2743809..2744029 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:2750250..2750491 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:2816387..2816637 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:2847380..2847597 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:2430352..2431563 +Gossypium armourianum (D2-1) genome ISU_v1n/a
chr06chromosomechr06:2430805..2431194 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_06chromosomeChr_06:2244198..2244421 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr_06chromosomeChr_06:2245715..2245932 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:2823297..2823579 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:2402828..2403047 +Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:1962963..1963377 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr09chromosomeChr09:6743223..6743422 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr06chromosomeGh165:1..710 .
Chr06:2717921..2718651 +		n/a
Chr6chromosomeGh165:1..710 .
Chr6:1785332..1786062 -		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908107DQ908107Gossypium hirsutumsequence_feature


Sequence
>Gh165 ID=Gh165; Name=Gh165; organism=Gossypium hirsutum; type=genetic_marker; length=221bp
TGTTGAGATAAGGAACTTGACACAAATTAAGCAACACTGATCTACTAATG
AAGAAGAAGAAGAAGCTAGCGATTAGCTAGCTTAGTTTTATGCTCAAAGC
ACTATGAGAAACGAAAGAGATAGAAGATATTGAGAAGCAAGCAATGAGAA
AATCCATAGTCTCCTACAAGTCATAACATGCATTTTAATGTCAAATAACT
CTAGCCAAAGTGTAACATCCC