Gh164, Gh164 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh164
Genbank IDDQ908106
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908106
Source Typegenomic
Repeat MotifT(13)
Primer 1Gh164_F: TCATTGCCTCACTTCACTCTGT
Primer 2Gh164_R: TGGTGATATCTGATCCATCTATGC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908106
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:1125338..1125512 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A08chromosomeA08:279341..279524 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:542345..542521 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:496801..496984 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:553303..553483 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:609976..610159 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:61246189..61246375 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016621.1chromosomeCM016621.1:142873409..142873595 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold699.1supercontigscaffold699.1:555198..555372 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold615.1supercontigscaffold615.1:141882..142065 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:609848..610022 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:250052..250235 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold70751supercontigscaffold70751:444..618 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:602649..602823 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:606733..606914 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:516916..517090 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:502827..503010 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:556210..556384 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:617478..617661 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:581773..581949 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt08chromosomeDt08:659233..659415 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At08chromosomeAt08:271127..271310 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6609supercontigscaffold6609:271127..271310 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold14341supercontigscaffold14341:151172..151354 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:529131..529307 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:509984..510167 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:492813..492989 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:493113..493296 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:546192..546367 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:512136..512317 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:601258..601435 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:527472..527653 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:534118..534295 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017695.1chromosomeCM017695.1:541696..541878 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:559391..559565 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:604241..604424 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:545847..546032 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:620429..620613 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:539903..540083 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:586630..586819 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:532858..533038 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_04chromosomeChr_04:418992..419267 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:616236..616415 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:530465..530645 +Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:516004..516181 +Gossypium lobatum (D7) genome ISU_v1n/a
E08chromosomeE08:794383..794569 +Gossypium stocksii (E1) genome NSF_v1n/a
F08chromosomeF08:324307..324493 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr04chromosomeGh164:1..639 .
Chr04:560654..561295 +		n/a
Chr4chromosomeGh164:1..639 .
Chr4:29054860..29055502 +		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908106DQ908106Gossypium hirsutumsequence_feature


Sequence
>Gh164 ID=Gh164; Name=Gh164; organism=Gossypium hirsutum; type=genetic_marker; length=178bp
TCATTGCCTCACTTCACTCTGTTTCTCAAACAGGGGGCTTCATTTTTATT
GCCAAACATCAACAAACCAGTGAGAGATTCTCTTTGTTAAAAGGGTTTTT
TTTTTTTTCATTTCAAAAAATCCCCTGTTTTTTTACAATAAAAAATAAAG
AAAAGCATAGATGGATCAGATATCACCA