Gh159, Gh159 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	Gh159
Genbank ID	DQ908101
Type	SSR
Species	Gossypium hirsutum
Germplasm	Tamcot Sphinx
Source Sequence	DQ908101
Source Type	genomic
Repeat Motif	TCT(5)
Primer 1	Gh159_F: CTTGCTCTCTAGGCTTGAAGG
Primer 2	Gh159_R: GTCTGTGAAAGGCACGGA
Publication	[view all]
Comment	Primer data obtained in 2008-01 from Hoffman, Steve M.

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	DQ908101

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
tig00026054_CRI-A2_v1.0.a1	chromosome	tig00026054_CRI-A2_v1.0.a1:50819..50993 -	Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1	n/a
scaffold35428_obj	supercontig	scaffold35428_obj:1323..1497 -	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
Scaffold3674	supercontig	Scaffold3674:67241..67415 -	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
Contig00011	chromosome	Contig00011:80385..80559 +	Gossypium thurberi (D1-5) genome CRI_v1	n/a
Contig00065	chromosome	Contig00065:109934..110108 -	Gossypium thurberi (D1-5) genome CRI_v1	n/a
Contig00038	chromosome	Contig00038:242190..242364 -	Gossypium davidsonii (D3d-8) genome CRI_v1	n/a
F07	chromosome	F07:31637752..31637925 +	Gossypium longicalyx (F1) genome NSF_v1	n/a
Chr03	chromosome	Chr03:18837600..18837774 +	Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1	n/a

Publications


Year	Publication
2007	Hoffman S, Yu J, Grum D, Xiao J, Kohel R, Pepper A. Identification of 700 New Microsatellite Loci from Cotton (G. hirsutum L.). Journal of cotton science. 2007; 11(4):208-241

Germplasm


Stock Name	Type
Tamcot Sphinx	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
DQ908101	DQ908101	Gossypium hirsutum	sequence_feature

Sequence

>Gh159 ID=Gh159; Name=Gh159; organism=Gossypium hirsutum; type=genetic_marker; length=175bp
CTTGCTCTCTAGGCTTGAAGGTGGTATGAAAGAAATAGATCTTAGTGCCT
TATACGACCTAGAAGGAGGATTGCTTCTCTCACCCGTAGGCGCAAGGGTT
CTTTCTTATTGATTCATGCGCATCTACTTCTTCTTCTTCTTCTTTGACTT
AGGCTGCTCCGTGCCTTTCACAGAC

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Gh159, Gh159 (genetic_marker) Gossypium hirsutum