Gh152, Gh152 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh152
Genbank IDDQ908094
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908094
Source Typegenomic
Repeat MotifCT(5)
Primer 1Gh152_F: CCTGCCCTGAACAAAGTTG
Primer 2Gh152_R: TGCTAAACAAGACGGTGAGAAC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908094
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:54424911..54425568 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D04chromosomeD04:54473110..54473272 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D04chromosomeD04:54417014..54417171 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A04chromosomeA04:80566129..80566291 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018205.1chromosomeCM018205.1:79124917..79125079 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:651643..651820 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_2_4chromosomeKI_2_4:1525757..1525918 +Gossypioides kirkii genome ISU_v3n/a
KI_2_4chromosomeKI_2_4:1587637..1587798 +Gossypioides kirkii genome ISU_v3n/a
KI_2_4chromosomeKI_2_4:1604403..1604564 +Gossypioides kirkii genome ISU_v3n/a
KI_2_4chromosomeKI_2_4:1615216..1615377 +Gossypioides kirkii genome ISU_v3n/a
KI_2_4chromosomeKI_2_4:1540123..1540284 -Gossypioides kirkii genome ISU_v3n/a
KI_2_4chromosomeKI_2_4:1576825..1576986 -Gossypioides kirkii genome ISU_v3n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:1254544..1254706 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016617.1chromosomeCM016617.1:125920941..125921102 -Gossypium australe (G2) genome CRI_v1.1n/a
CM016617.1chromosomeCM016617.1:125974635..125974796 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr12chromosomeDt_chr12:3963452..3963614 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr12chromosomeDt_chr12:4021736..4021893 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr12chromosomeDt_chr12:4013339..4013996 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:49360082..49360739 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D04chromosomeD04:49408575..49408737 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D04chromosomeD04:49352186..49352343 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A04chromosomeA04:61252082..61252244 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:54208013..54208669 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D04chromosomeGhir_D04:54256160..54256322 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D04chromosomeGhir_D04:54200119..54200276 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A04chromosomeGhir_A04:83208236..83208398 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:54862385..54863042 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:54905811..54905973 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:54854488..54854645 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:85910756..85910918 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:54065033..54065668 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:54113197..54113359 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:54057137..54057294 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:52076234..52076890 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D04chromosomeD04:52124433..52124595 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D04chromosomeD04:52068337..52068494 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A04chromosomeA04:79129043..79129205 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At04chromosomeAt04:64371727..64371889 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12738supercontigscaffold12738:167650..167812 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A04chromosomeGbar_A04:79609016..79609178 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A04chromosomeA04:80013402..80013564 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:52352099..52352257 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017626.1chromosomeCM017626.1:52370105..52370263 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017613.1chromosomeCM017613.1:81582885..81583047 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:55144482..55145131 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017652.1chromosomeCM017652.1:55191768..55191930 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017639.1chromosomeCM017639.1:90219021..90219183 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017639.1chromosomeCM017639.1:90187372..90187536 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017691.1chromosomeCM017691.1:80113336..80113498 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:55989476..55990133 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D04chromosomeD04:56037676..56037838 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D04chromosomeD04:55981579..55981736 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A04chromosomeA04:87254779..87254941 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:107264179..107264341 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:107298583..107298745 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:109112379..109112541 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:61284767..61284944 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_02chromosomeB_02:2110624..2110788 +Gossypium anomalum (B1) genome NSF_v1n/a
B_02chromosomeB_02:2141716..2141878 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr12chromosomeChr12:52546692..52546844 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr11chromosomeChr11:63329582..63329763 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_11chromosomeChr_11:43261789..43262204 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:52411199..52411336 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:52382801..52382950 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:48827513..48828202 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:48828045..48828561 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:35603701..35603851 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:35603179..35604309 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:48098734..48099387 -Gossypium lobatum (D7) genome ISU_v1n/a
F04chromosomeF04:89353762..89353924 -Gossypium longicalyx (F1) genome NSF_v1n/a
F04chromosomeF04:89349859..89350023 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr04chromosomeChr04:175818917..175819078 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908094DQ908094Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch22_Dt.04N/A39.2Gh152View
Sequence
>Gh152 ID=Gh152; Name=Gh152; organism=Gossypium hirsutum; type=genetic_marker; length=163bp
CCTGCCCTGAACAAAGTTGTAAATTGAGCAGACAGTTAATACTTGTATAT
TTCTTGAAAGAAAACCAGAAACCATGATATACTTCATCCCTTAAGCAAAT
AAGCTCTCTCTCTACCCTGCTCTCACCCGCACTCTGTTGAAGTTCTCACC
GTCTTGTTTAGCA