Gh149, Gh149 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh149
Genbank IDDQ908091
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908091
Source Typegenomic
Repeat MotifTC(10)
Primer 1Gh149_F: GAGGCAGAGAGTCTTATCTATGGA
Primer 2Gh149_R: GGAATCCATTTGAGACAATGTGA
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908091
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:1117604..1117838 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A09chromosomeA09:1359498..1359760 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:1073545..1073765 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018210.1chromosomeCM018210.1:1148094..1148360 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:1211701..1211935 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:1141238..1141500 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_09chromosomeD10_09:41151525..41151774 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:98621522..98621738 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold559.1supercontigscaffold559.1:652278..652512 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr6chromosomeAt_chr6:5557306..5557568 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:1165473..1165707 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A09chromosomeA09:1124015..1124277 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:1180015..1180249 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:1202437..1202699 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:1175680..1175914 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:1237419..1237681 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:1083730..1083962 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:1276752..1277014 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:1013923..1014157 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A09chromosomeA09:1434455..1434717 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold5942supercontigscaffold5942:160718..160984 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D09chromosomeGbar_D09:1059534..1059754 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:1167103..1167369 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:1135034..1135254 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A09chromosomeA09:1339890..1340156 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:1222269..1222503 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017618.1chromosomeCM017618.1:1209243..1209511 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:1108197..1108421 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017644.1chromosomeCM017644.1:1156205..1156461 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:1156327..1156555 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017696.1chromosomeCM017696.1:1368602..1368859 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:1201342..1201576 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A09chromosomeA09:1317261..1317523 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:1269295..1269550 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:1248287..1248541 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:1184225..1184485 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:1193239..1193501 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:1192980..1193214 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:1245337..1245575 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:1282512..1282776 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_06chromosomeChr_06:810605..811190 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:1362750..1362982 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:955081..955432 -Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:673568..673788 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr06chromosomeChr06:778965..779187 -Gossypium lobatum (D7) genome ISU_v1n/a
Chr09chromosomeChr09:1806859..1807076 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr06chromosomeGh149:1..692 .
Chr06:1175358..1176029 -		n/a
Chr6chromosomeGh149:1..692 .
Chr6:3365069..3365734 +		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908091DQ908091Gossypium hirsutumsequence_feature


Sequence
>Gh149 ID=Gh149; Name=Gh149; organism=Gossypium hirsutum; type=genetic_marker; length=261bp
GAGGCAGAGAGTCTTATCTATGGAACTAATCTTTGTTTTAGGAGGTGAGA
CATGATAGAAATATAAACCAAACACGTCTATCTCTCTCTCTTTCTTTTTC
TCTCTCTCTCTCTCTCTCTTTCTCTTTCTCTCTCTCTCTCTTTCTCCCAA
AATTATTTTCTCTTTTTCTCACCTTGTTTTTTGACACAAATTAACCATAT
TCATCCAGAAATAAGGACCACCGAGGGAAAAATAAAAATCACATTGTCTC
AAATGGATTCC