Gh148, Gh148 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh148
Genbank IDDQ908090
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908090
Source Typegenomic
Repeat MotifTC(11)
Primer 1Gh148_F: AAATCTAGATCAGCACAGTAAAGCTC
Primer 2Gh148_R: TTGATTGGCATTACAGCAAGATAGAG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908090
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:53585342..53585447 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A03chromosomeA03:82816573..82816676 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:50283565..50283670 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018204.1chromosomeCM018204.1:84130650..84130753 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:16975299..16975415 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:108538832..108538934 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_03chromosomeD10_03:16811797..16811899 -Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr5chromosomeAt_chr5:32970801..32970904 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:50880813..50880918 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A03chromosomeA03:76145987..76146090 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:52682549..52682654 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:89919070..89919173 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:53305643..53305748 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:89150246..89150349 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:54060322..54060427 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:86945461..86945564 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:51104823..51104928 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A03chromosomeA03:82512222..82512325 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At03chromosomeAt03:78280557..78280660 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2032supercontigscaffold2032:570398..570501 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10038supercontigscaffold10038:446186..446291 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D02chromosomeGbar_D02:50862182..50862287 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A03chromosomeGbar_A03:83481507..83481610 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:52199067..52199172 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A03chromosomeA03:85598085..85598188 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:53099216..53099329 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017612.1chromosomeCM017612.1:85100766..85100869 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:54497177..54497288 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017638.1chromosomeCM017638.1:91541891..91541994 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:51699257..51699362 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017690.1chromosomeCM017690.1:85515487..85515591 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:55056550..55056655 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A03chromosomeA03:90453215..90453318 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:27251121..27251224 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:26477911..26478014 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr03chromosomeChr03:46257325..46257440 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_03chromosomeB_03:23042310..23042405 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:49104331..49104432 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:36070037..36070137 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr05_5097683chromosomeChr05_5097683:9096..9198 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:50755503..50755604 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:32426383..32426486 +Gossypium aridum (D4) genome ISU_v1n/a
Chr05_3388588chromosomeChr05_3388588:5344..5443 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr05chromosomeChr05:33786447..33786552 +Gossypium lobatum (D7) genome ISU_v1n/a
E03chromosomeE03:98571604..98571701 +Gossypium stocksii (E1) genome NSF_v1n/a
F03chromosomeF03:88022238..88022362 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908090DQ908090Gossypium hirsutumsequence_feature


Sequence
>Gh148 ID=Gh148; Name=Gh148; organism=Gossypium hirsutum; type=genetic_marker; length=104bp
AAATCTAGATCAGCACAGTAAAGCTCTTTTTTGTTTTTTGTTTTTTGCTC
AATTCTCTCTCTCCCTCTCTCTCTCTCACTCTATCTTGCTGTAATGCCAA
TCAA