Gh139, Gh139 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh139
Genbank IDDQ908081
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908081
Source Typegenomic
Repeat MotifCA(8)
Primer 1Gh139_F: GACACCCTTGGACTTGTTTCAG
Primer 2Gh139_R: CAGTTCAAAGAATCTTTGTCAATG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908081
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:62953297..62953481 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D10_12chromosomeD10_12:53848292..53848481 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016625.1chromosomeCM016625.1:1103673..1103865 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold4573_D12supercontigscaffold4573_D12:23885..24070 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:61751180..61751364 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:60866500..60866685 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:106640050..106640368 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:61814342..61814528 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:59671126..59671311 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A12chromosomeA12:101738479..101738685 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:58168763..58168946 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:59941009..59941291 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A12chromosomeA12:100719761..100720073 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017660.1chromosomeCM017660.1:63007888..63008072 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:60487118..60487301 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:62373753..62373937 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:56894606..56894791 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:83859739..83859934 +Gossypium anomalum (B1) genome NSF_v1n/a
chr08chromosomechr08:44908938..44909132 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:42456175..42456414 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:32853346..32853533 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:40340729..40340965 -Gossypium lobatum (D7) genome ISU_v1n/a
E12chromosomeE12:113634805..113634990 -Gossypium stocksii (E1) genome NSF_v1n/a
F12chromosomeF12:90459839..90460039 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908081DQ908081Gossypium hirsutumsequence_feature


Sequence
>Gh139 ID=Gh139; Name=Gh139; organism=Gossypium hirsutum; type=genetic_marker; length=188bp
GACACCCTTGGACTTGTTTCAGAACACATAATTTGTGGGNNGGGGGGGGT
TNGGNTTTAATTTCTTANCACACACACACACACAAAAAAAAAGGGTTTTT
CAGGAAATGGGAAAAGGATTCAACAGTGGTAGGCGGGGAAGAAATTTGAA
GCCTTGATTTTGAACATTGACAAAGATTCTTTGAACTG