Gh138, Gh138 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh138
Genbank IDDQ908080
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908080
Source Typegenomic
Repeat MotifTCT(13)
Primer 1Gh138_F: CCAGTGAACAACTCATCAGACG
Primer 2Gh138_R: GAGAAGGACCAAATCTGTGGA
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908080
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:9357187..9357380 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018218.1chromosomeCM018218.1:8601258..8601457 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:42401898..42402108 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
scaffold71.1supercontigscaffold71.1:2052376..2052572 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:8521003..8521199 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:9189941..9190137 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:8977997..8978193 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:9089744..9089937 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:8505760..8505956 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt04chromosomeDt04:9286682..9286887 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1869supercontigscaffold1869:453460..453665 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D04chromosomeGbar_D04:8670551..8670753 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:8639056..8639255 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:8737380..8737576 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:8964055..8964270 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:8666223..8666434 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:9568225..9568421 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:42153046..42153243 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
chr12chromosomechr12:7994384..7994981 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr12chromosomeChr12:5753252..5753489 -Gossypium gossypioides (D6) genome ISU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908080DQ908080Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch22_Dt.04N/A92.1GH138View
Sequence
>Gh138 ID=Gh138; Name=Gh138; organism=Gossypium hirsutum; type=genetic_marker; length=197bp
CCAGTGAACAACTCATCAGACGAGTCAGAATCTTCTTCACTCGAACTTTC
ATCTTCCTTTTATCTTTTCTGGGATAGCTTGGGGGCAACATGAGTATTCC
TTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTACTCT
TAACCAGAGCCTTAAACTATTGATTTTCCACAGATTTGGTCCTTCTC