Gh136, Gh136 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh136
Genbank IDDQ908078
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908078
Source Typegenomic
Repeat MotifTA(5)
Primer 1Gh136_F: CACCAACCTCGAGCACC
Primer 2Gh136_R: AACCCAAAGTTGTCAAATACCTT
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908078
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:4702738..4702876 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A02chromosomeA02:3490880..3491022 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:4111321..4111461 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018203.1chromosomeCM018203.1:3522305..3522447 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:59632851..59632989 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_03chromosomeKI_03:2927869..2928007 -Gossypioides kirkii genome ISU_v3n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:3860105..3860246 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_03chromosomeD10_03:60982394..60982533 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016616.1chromosomeCM016616.1:148094987..148095131 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold4267.1supercontigscaffold4267.1:69687..69829 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold189.1supercontigscaffold189.1:713473..713611 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A02chromosomeA02:3382362..3382504 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:4491182..4491320 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A02chromosomeGhir_A02:3529290..3529432 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:4292389..4292527 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:3381338..3381480 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:4511282..4511420 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:3644484..3644626 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:4432020..4432158 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A02chromosomeA02:3519687..3519829 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold8917supercontigscaffold8917:187928..188068 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10579supercontigscaffold10579:170319..170461 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D02chromosomeGbar_D02:4615430..4615570 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A02chromosomeGbar_A02:3448716..3448858 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:4250907..4251045 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A02chromosomeA02:3445320..3445462 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:4883555..4883693 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017611.1chromosomeCM017611.1:3524559..3524699 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:5145760..5145896 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017637.1chromosomeCM017637.1:3575298..3575442 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:4542053..4542191 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017689.1chromosomeCM017689.1:3519374..3519516 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:4613606..4613744 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A02chromosomeA02:3668130..3668272 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:128080774..128080916 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:3892568..3892706 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_03chromosomeB_03:103241118..103241274 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:4329596..4329736 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr05chromosomeChr05:4468714..4468852 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:3515774..3515918 -Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:2687045..2687181 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr05chromosomeChr05:3751543..3751685 -Gossypium lobatum (D7) genome ISU_v1n/a
E03chromosomeE03:5422275..5422417 -Gossypium stocksii (E1) genome NSF_v1n/a
F03chromosomeF03:3545275..3545415 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr03chromosomeChr03:200713917..200714063 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr05chromosomeGh136:1..466 .
Chr05:3877513..3877980 -		n/a
Chr5chromosomeGh136:1..466 .
Chr5:1315149..1315614 +		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908078DQ908078Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch14_Dt.02N/A33.8GH136View
Sequence
>Gh136 ID=Gh136; Name=Gh136; organism=Gossypium hirsutum; type=genetic_marker; length=139bp
CACCAACCTCGAGCACCTCCGCCATAGCCGAAGCTTAGGGATCCCTGTGA
CTTTAGGGCTGCAACCAGATGCTGCCATGTTCAAGCAGAGACTCGACATA
TATATATATGATTATAAAGGTATTTGACAACTTTGGGTT