Gh135, Gh135 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh135
Genbank IDDQ908077
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908077
Source Typegenomic
Repeat MotifGA(8)
Primer 1Gh135_F: GGAGATCGGTAGGAGAGGAGAG
Primer 2Gh135_R: GAATGCTTCTTCATCTCCCTCTTC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908077
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:25782047..25782188 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:31213884..31214023 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:58946549..58946690 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold3540.1supercontigscaffold3540.1:92846..92987 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:23860259..23860400 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:32900831..32900972 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:32120244..32120385 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:32355205..32355346 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:30080631..30080772 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At04chromosomeAt04:53728689..53728828 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At04chromosomeAt04:53724528..53724667 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4165supercontigscaffold4165:632374..632513 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4165supercontigscaffold4165:628213..628352 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A03chromosomeGbar_A03:31025458..31025597 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:43404166..43404301 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:31408109..31408248 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:31603432..31603573 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:33326044..33326183 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:31366904..31367045 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:32983408..32983549 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:76861765..76861906 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:74516706..74516847 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_06chromosomeB_06:70130707..70130847 +Gossypium anomalum (B1) genome NSF_v1n/a
B_07chromosomeB_07:60728675..60728814 -Gossypium anomalum (B1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908077DQ908077Gossypium hirsutumsequence_feature


Sequence
>Gh135 ID=Gh135; Name=Gh135; organism=Gossypium hirsutum; type=genetic_marker; length=142bp
GGAGATCGGTAGGAGAGGAGAGATTGATCTACAAGTATTCGGCCAAAAGG
AAAAACAATTGAGAGAGAGAGAGAGACTGAATATTCGACCAAGGTGCAAG
GTGAAGAAAGGATAAAATGAAGAGGGAGATGAAGAAGCATTC