Gh127, Gh127 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh127
Genbank IDDQ908069
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908069
Source Typegenomic
Repeat MotifTC(11)
Primer 1Gh127_F: CTGACCAATGTTAATCGGATCA
Primer 2Gh127_R: TGTGAGAAGAAACCGATTGG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908069
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:8440137..8440283 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A01chromosomeA01:10964343..10964491 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018202.1chromosomeCM018202.1:10068157..10068333 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:11572210..11572360 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016614.1chromosomeCM016614.1:14332755..14332926 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr2chromosomeAt_chr2:10466950..10467098 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold3918.1supercontigscaffold3918.1:68157..68303 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:7697059..7697205 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:9808037..9808185 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:9147337..9147483 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:10260191..10260338 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:8903418..8903564 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:9763482..9763630 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:8613622..8613768 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:10382526..10382674 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:9010976..9011122 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A01chromosomeA01:10203390..10203538 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold2044supercontigscaffold2044:35521..35697 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A01chromosomeGbar_A01:10153026..10153202 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
CM017610.1chromosomeCM017610.1:11195698..11195844 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:10463862..10464032 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:10345929..10346081 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:9291044..9291190 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:10394370..10394518 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:10466232..10466388 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:11413218..11413370 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr02chromosomeChr02:8849395..8849540 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
F01chromosomeF01:8896577..8896726 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr01chromosomeChr01:182499695..182499845 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908069DQ908069Gossypium hirsutumsequence_feature


Sequence
>Gh127 ID=Gh127; Name=Gh127; organism=Gossypium hirsutum; type=genetic_marker; length=149bp
CTGACCAATGTTAATCGGATCAAGTATATGGTTTTTTCAAGTCACTAAGC
TTTAGGAAAATTATTGGCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTTTT
CTTCTGAATTTTGTTTCCTGGGGTTCTTTCCAATCGGTTTCTTCTCACA