Gh123, Gh123 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh123
Genbank IDDQ908065
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908065
Source Typegenomic
Repeat MotifAGA(13)
Primer 1Gh123_F: CTTTGCCTAATTGCTGCACTG
Primer 2Gh123_R: CGTACTAATCAGTGGGCTAAGC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908065
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:58284291..58284447 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:54693174..54693336 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:4914452..4914598 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_12chromosomeKI_12:4094573..4094746 +Gossypioides kirkii genome ISU_v3n/a
D10_12chromosomeD10_12:49763131..49763292 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016625.1chromosomeCM016625.1:6678492..6678638 +Gossypium australe (G2) genome CRI_v1.1n/a
D12chromosomeD12:54764550..54764706 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:57187282..57187437 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:101996767..101996904 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:56455053..56455209 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:57266810..57266966 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:55431338..55431494 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At12chromosomeAt12:88731419..88731556 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5858supercontigscaffold5858:160645..160804 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9303supercontigscaffold9303:63707..63844 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D12chromosomeGbar_D12:53749473..53749632 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:97026168..97026305 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:55571196..55571355 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:55498454..55498634 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:58455391..58455546 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:56072124..56072280 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:57657354..57657510 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:52823878..52824024 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:53127997..53128139 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:41212224..41212373 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:39345198..39345356 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:54754508..54754663 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:38314255..38314392 -Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:36669722..36669862 -Gossypium lobatum (D7) genome ISU_v1n/a
F12chromosomeF12:86476384..86476521 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908065DQ908065Gossypium hirsutumsequence_feature


Sequence
>Gh123 ID=Gh123; Name=Gh123; organism=Gossypium hirsutum; type=genetic_marker; length=157bp
CTTTGCCTAATTGCTGCACTGAGAGAAAGAAGAAGAAGAAGAAGAAGAAG
AAGAAGAAGAAGAAGAAAAGGAGTAAGAGAGAGAGACTTAATGGTGGAAA
CATGGAGAANAAGACAATGAATGGAAGCCCCCATGGCTTAGCCCACTGAT
TAGTACG