Gh103, Gh103 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh103
Genbank IDDQ908045
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908045
Source Typegenomic
Repeat MotifAGA(6)
Primer 1Gh103_F: GTCGACAGTCAGCAGGTTC
Primer 2Gh103_R: CTTCTGATATCGTGCTGTTGTTC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908045
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A10chromosomeA10:66594800..66594938 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:66682143..66682281 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:11518243..11518738 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:85077585..85077723 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold178.1supercontigscaffold178.1:340552..340690 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:59023204..59023342 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:32350666..32350775 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D02chromosomeGhir_D02:46831391..46831501 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D02chromosomeGhir_D02:3848728..3848824 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D01chromosomeGhir_D01:11955963..11956063 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:70519891..70520029 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D13chromosomeGhir_D13:53769085..53769189 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D12chromosomeGhir_D12:48490623..48490729 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D02chromosomeGhir_D02:62147695..62147804 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:72057488..72057626 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:70282869..70283007 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:65935039..65935177 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold2214supercontigscaffold2214:356636..356745 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5627supercontigscaffold5627:231346..231456 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4530supercontigscaffold4530:455795..455933 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold21012supercontigscaffold21012:45829..45932 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D02chromosomeGbar_D02:45019142..45019252 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:67032404..67032542 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D13chromosomeGbar_D13:50380365..50380468 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:68556483..68556621 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:67863301..67863439 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:73625285..73625423 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:69571294..69571432 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:73345471..73345609 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:36007585..36007723 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:42947353..42947491 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
chr05chromosomechr05:38919217..38919558 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908045DQ908045Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch08_At.08N/A6.2Gh103View
Sequence
>Gh103 ID=Gh103; Name=Gh103; organism=Gossypium hirsutum; type=genetic_marker; length=139bp
GTCGACAGTCAGCAGGTTCTTAAAAAAGAAGAAGAAGAAGAAGAAAAAGA
AAAAGAAGAAATCATATATCGGTATGGAATGCCAAAGATGATCATATCTA
ATAATGCACTAAATTTGAACAACAGCACGATATCAGAAG