Gh101, Gh101 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh101
Genbank IDDQ908043
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908043
Source Typegenomic
Repeat MotifAGA(7)
Primer 1Gh101_F: GAAGAGGACGTTGTTGCTG
Primer 2Gh101_R: GACTTGGGTGCGGTGATAGT
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908043
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:37434073..37434203 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:34457386..34457513 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Dt_chr10chromosomeDt_chr10:51996126..51996256 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:34841225..34841355 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:37275532..37275662 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:36812358..36812488 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:36735422..36735552 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:34039960..34040090 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:37495631..37495758 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:34852797..34852924 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:35445755..35445885 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:36224898..36225016 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:35138924..35139054 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:37062076..37062206 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:32790985..32791156 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeGh101:1..431 .
Chr10:34396817..34397331 -		n/a
scaffold602supercontigGh101:1..431 .
scaffold602:54656..55205 -		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908043DQ908043Gossypium hirsutumsequence_feature


Sequence
>Gh101 ID=Gh101; Name=Gh101; organism=Gossypium hirsutum; type=genetic_marker; length=131bp
GAAGAGGACGTTGTTGCTGAAGAAGAAGTTGTTGAAAATGAGAAAGAAGA
ACAAGAAGAAGAAGAAGAAAAGGAAGAAGAAGAAAAAGAAGAAGAAGACT
TTGTTGAGAAAACTATCACCGCACCCAAGTC