Gh097, Gh097 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh097
AliasGh97
Genbank IDDQ908039
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908039
Source Typegenomic
Repeat MotifTCT(6)
Primer 1Gh097_F: TCAGCTGACTGCATTGGT
Primer 2Gh097_R: GGAACCTCTACTGAATAGTCGGAG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908039
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:20624950..20625079 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
scaffold_3776supercontigscaffold_3776:13109..13237 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D5_11chromosomeD5_11:21153724..21153852 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_09chromosomeD5_09:14261504..14261626 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_09chromosomeD10_09:28617247..28617373 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr11chromosomeDt_chr11:55864658..55864787 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:20331712..20331841 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:21487078..21487207 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:21391474..21391603 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:20904631..20904760 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:19339403..19339532 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
CM017657.1chromosomeCM017657.1:20618888..20619014 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D09chromosomeD09:22286448..22286577 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:19475776..19475904 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:19495030..19495152 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr06chromosomeChr06:19510155..19510287 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:32509169..32509621 +Gossypium armourianum (D2-1) genome ISU_v1n/a
chr06chromosomechr06:20666579..20666705 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr06chromosomeChr06:20443811..20443937 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
scaffold481supercontigGh097:1..488 .
scaffold481:64087..64558 -		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908039DQ908039Gossypium hirsutumsequence_feature


Sequence
>Gh097 ID=Gh097; Name=Gh097; organism=Gossypium hirsutum; type=genetic_marker; length=130bp
TCAGCTGACTGCATTGGTTCAATCTCAGTGGGATCTTCTCCTTCTTCTTC
TTCTTCTTCTTTTTCAGGATCCTCACTCTCTTCAACTCGTTGCTAGAGAA
CAAAGTCTCCGACTATTCAGTAGAGGTTCC