Gh093, Gh093 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh093
AliasGh93
Genbank IDDQ908035
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908035
Source Typegenomic
Repeat MotifTCT(7)
Primer 1Gh093_F: CAATGATTAAACCGGATGGGT
Primer 2Gh093_R: GTTGGACAAGTAGTCAAAGGGTC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908035
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A02chromosomeA02:47763045..47763198 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018203.1chromosomeCM018203.1:45762406..45762559 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:80067038..80067189 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr3chromosomeAt_chr3:15282807..15282960 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A02chromosomeA02:44723947..44724100 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:48588512..48588664 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:46790668..46790821 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:47166617..47166770 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:46618158..46618311 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At02chromosomeAt02:48362959..48363112 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5645supercontigscaffold5645:222535..222688 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A02chromosomeGbar_A02:46265818..46265971 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A02chromosomeA02:46753085..46753238 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:46049962..46050115 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:49310939..49311092 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017689.1chromosomeCM017689.1:46524851..46525004 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:48106269..48106422 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:31597403..31597554 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:86265173..86265324 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_04chromosomeB_04:27072447..27072599 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr03chromosomeGh093:1..520 .
Chr03:20518070..20518571 +		n/a
Chr3chromosomeGh093:1..520 .
Chr3:12013577..12014078 +		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908035DQ908035Gossypium hirsutumsequence_feature


Sequence
>Gh093 ID=Gh093; Name=Gh093; organism=Gossypium hirsutum; type=genetic_marker; length=154bp
CAATGATTAAACCGGATGGGTAATTTTCCATTTTCCCTTCTTTTTCTCCT
CTTCTTCTTCTTCTTCTTCTTTTTCTCAATTTCTCTTATTCTTCTTTTTA
CCCTTAACCATTCATTTTTTCTTTTCTTTTTGACCCTTTGACTACTTGTC
CAAC