Gh090, Gh090 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh090
AliasGh90
Genbank IDDQ908032
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908032
Source Typegenomic
Repeat MotifTG(5)
Primer 1Gh090_F: GTGCTGATTGGAGTATAGAAATTG
Primer 2Gh090_R: CTCTAATCCCCAGGCTCTACC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908032
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A04chromosomeA04:51812748..51812868 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018205.1chromosomeCM018205.1:60704789..60704909 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:22394360..22394480 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016614.1chromosomeCM016614.1:45357729..45357847 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold994_A04supercontigscaffold994_A04:10169..10289 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A04chromosomeGhir_A04:63782685..63782805 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A04chromosomeA04:66972459..66972579 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:63904260..63904380 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:59489412..59489532 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold848supercontigscaffold848:11187..11307 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A04chromosomeGbar_A04:61117548..61117668 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A04chromosomeA04:61709023..61709143 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017613.1chromosomeCM017613.1:62760778..62760898 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017639.1chromosomeCM017639.1:70649702..70649822 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017691.1chromosomeCM017691.1:61237899..61238019 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A04chromosomeA04:67446968..67447088 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:78292149..78292269 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:88746338..88746458 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:128769829..128769947 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908032DQ908032Gossypium hirsutumsequence_feature


Sequence
>Gh090 ID=Gh090; Name=Gh090; organism=Gossypium hirsutum; type=genetic_marker; length=121bp
GTGCTGATTGGAGTATAGAAATTGTGTGTGTAATATCTGTCTGCTTTAAT
GGTTAAGTATTCTGGGTGTGTGTGTGAAGTTCCAAGTTCAAGTTTAGTGT
GGTAGAGCCTGGGGATTAGAG