Gh089, Gh089 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh089
AliasGh89
Genbank IDDQ908031
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908031
Source Typegenomic
Repeat MotifAGA(9)
Primer 1Gh089_F: CCAGGAGGTTGAATCATCTACTC
Primer 2Gh089_R: CAATTGTAAGTTAGACTTTCGCC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908031
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A08chromosomeA08:32392556..32392780 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018209.1chromosomeCM018209.1:34432566..34432793 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:36760047..36760265 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr4chromosomeAt_chr4:28978522..28978746 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A08chromosomeA08:28810589..28810813 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:36409198..36409422 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:36681063..36681287 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:36841498..36841722 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:40278637..40278853 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold7111supercontigscaffold7111:273764..273991 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A08chromosomeGbar_A08:35806895..35807122 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:34839606..34839833 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017617.1chromosomeCM017617.1:35424118..35424354 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017643.1chromosomeCM017643.1:38226821..38227036 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:35100587..35100811 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:37763462..37763686 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:39208623..39208841 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908031DQ908031Gossypium hirsutumsequence_feature


Sequence
>Gh089 ID=Gh089; Name=Gh089; organism=Gossypium hirsutum; type=genetic_marker; length=222bp
CCAGGAGGTTGAATCATCTACTCATTAAATGAGAATGGAGAAGAAGAAGA
AGAAGAAGAAGAAGAGAATGTTGATGTTAGAAAGAAGAACCTAAACATTA
AGTAGATAGGAAAAAACATTTGAAATGTCCCCTTCCCATAAATATACTTT
TGGTCCCTTTGATTTCCCTACCAAATCTAGGGTAGGTAAAAGAAAATCTG
GCGAAAGTCTAACTTACAATTG