Gh087, Gh087 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh087
AliasGh87
Genbank IDDQ908029
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908029
Source Typegenomic
Repeat MotifCA(9)
Primer 1Gh087_F: GGCTACACGAACTTTTCGATTATC
Primer 2Gh087_R: CGATAATCCATATGATGTTATGTGC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908029
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A04chromosomeA04:18637603..18637753 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018205.1chromosomeCM018205.1:28692462..28692610 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:55072436..55072588 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr12chromosomeAt_chr12:29979548..29979698 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold831_A04supercontigscaffold831_A04:649481..649631 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A04chromosomeGhir_A04:30591123..30591273 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A04chromosomeA04:30222291..30222441 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:29416780..29416930 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:28531104..28531254 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold10833supercontigscaffold10833:138613..138761 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10833supercontigscaffold10833:137094..137242 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A04chromosomeGbar_A04:28358071..28358219 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A04chromosomeA04:28520748..28520896 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017613.1chromosomeCM017613.1:29992926..29993080 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017639.1chromosomeCM017639.1:33717605..33717767 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017691.1chromosomeCM017691.1:28490686..28490834 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A04chromosomeA04:31451265..31451415 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:52680222..52680376 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:53604320..53604470 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908029DQ908029Gossypium hirsutumsequence_feature


Sequence
>Gh087 ID=Gh087; Name=Gh087; organism=Gossypium hirsutum; type=genetic_marker; length=151bp
GGCTACACGAACTTTTCGATTATCTTACTCAAACAATTGCACACACACAC
ACACACACATATATATATACATTCAATAAACTTTGAGTAAGTTTACTTAT
CACATTCACTTAATCAAATAAGTTAGGCACATAACATCATATGGATTATC
G