Gh081, Gh081 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh081
AliasGh81
Genbank IDDQ908023
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908023
Source Typegenomic
Repeat MotifTCT(8)
Primer 1Gh081_F: GAACCCAACTATTCCAATTCATG
Primer 2Gh081_R: CACGAGTCAATTTGGATCTGTG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908023
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:843929..844121 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:873507..873699 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_12chromosomeD10_12:718889..719074 +Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold1701.1supercontigscaffold1701.1:228857..229049 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold14805supercontigscaffold14805:1449..1641 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D12chromosomeD12:794291..794483 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:852902..853094 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:844452..844644 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:845973..846165 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
scaffold6407supercontigscaffold6407:19113..19305 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D12chromosomeGbar_D12:861337..861529 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:832193..832385 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:804111..804299 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:820904..821108 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:839957..840146 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:866118..866310 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
chr08chromosomechr08:799993..800225 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:723765..724033 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:783362..783548 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:757118..757342 +Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908023DQ908023Gossypium hirsutumsequence_feature


Sequence
>Gh081 ID=Gh081; Name=Gh081; organism=Gossypium hirsutum; type=genetic_marker; length=193bp
GAACCCAACTATTCCAATTCATGAAAAAGGAACAAAAAGAGAAATCTTTT
AAGACTCTCCAATTTTCTCTTCTTCTTCTTCTTCTTCTTCTTTTTTTTTT
GAGCTTTTCAGTGGGATATTCTTTATCTTATAAATTTAGAATGTAAAAGA
AAAAATCAATTTATAAGACAACACAGATCCAAATTGACTCGTG