Gh078, Gh078 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh078
AliasGh78
Genbank IDDQ908020
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908020
Source Typegenomic
Repeat MotifAGG(5)
Primer 1Gh078_F: TCATAAACTGTGACTTACCGCA
Primer 2Gh078_R: GAGACCATAAGCCTCATTGGAG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908020
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A06chromosomeA06:119530590..119530750 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018207.1chromosomeCM018207.1:114338261..114338415 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:131083832..131083981 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold1851.1supercontigscaffold1851.1:222609..222769 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A06chromosomeA06:101676614..101676774 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:121886399..121886538 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:122112606..122112766 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:110540941..110541094 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A06chromosomeA06:124607608..124607768 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:124190829..124190989 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:119986476..119986636 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold12227supercontigscaffold12227:35001..35154 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold32144supercontigscaffold32144:52514..52653 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold32144supercontigscaffold32144:50666..50805 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold17187supercontigscaffold17187:154348..154502 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A08chromosomeGbar_A08:119098404..119098543 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:113337052..113337206 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:99924823..99924976 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A06chromosomeA06:116377420..116377574 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017615.1chromosomeCM017615.1:119700999..119701159 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017641.1chromosomeCM017641.1:124897093..124897253 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017693.1chromosomeCM017693.1:117598695..117598849 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A06chromosomeA06:126273099..126273259 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:129217880..129218029 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908020DQ908020Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch06_At.06N/A33.7GH78View
Sequence
>Gh078 ID=Gh078; Name=Gh078; organism=Gossypium hirsutum; type=genetic_marker; length=161bp
TCATAAACTGTGACTTACCGCAAATCTTACTCTATTTTCATCCACCAATT
TAACAACATCAGCGCCAATTTAGGGTTTAAGAAGAGAAAAATAATAAGAA
GAGGAGAAGGAGGAGGAGGAGGAGAAAAAATAGAGATGCCTCCAATGAGG
CTTATGGTCTC