Gh076, Gh076 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh076
AliasGh76
Genbank IDDQ908018
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908018
Source Typegenomic
Repeat MotifAAAAAG(3)
Primer 1Gh076_F: GAGTTCCACATTGCCTCCG
Primer 2Gh076_R: GCCACATTTCTAAATCTCACAATTG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908018
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:2040125..2040251 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018206.1chromosomeCM018206.1:1994488..1994624 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:1955078..1955214 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016626.1chromosomeCM016626.1:3084846..3084971 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:67504867..67505003 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:1535457..1535593 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:2015503..2015627 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:2090589..2090725 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:2000508..2000644 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:2066247..2066383 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:2223563..2223699 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold8622supercontigscaffold8622:83593..83716 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold17766supercontigscaffold17766:85025..85161 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:1891165..1891288 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:1963874..1964010 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:2019748..2019884 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:2044539..2044675 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:2063199..2063335 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:2001562..2001698 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:2140102..2140238 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:2230437..2230574 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:1830225..1830361 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_05chromosomeB_05:83957163..83957294 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:1844290..1844415 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr09chromosomeChr09:1904218..1904343 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:1704829..1705078 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:1703571..1703787 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr13chromosomeChr13:196948322..196948445 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908018DQ908018Gossypium hirsutumsequence_feature


Sequence
>Gh076 ID=Gh076; Name=Gh076; organism=Gossypium hirsutum; type=genetic_marker; length=137bp
GAGTTCCACATTGCCTCCGTTCAAAGATCTAAACAACAAAAGAAAAAAAA
AGAAAAAGAAAAAGAAAACCAAACCTTAGAGAGATTAAAGAAACAAAGAA
AAAAAGAGAGTTCAATTGTGAGATTTAGAAATGTGGC