Gh074, Gh074 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh074
AliasGh74
Genbank IDDQ908016
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908016
Source Typegenomic
Repeat MotifCT(11)
Primer 1Gh074_F: ACAGCCTATAATAAGATGCCACA
Primer 2Gh074_R: CAGTAGCCAGAAACTTAAGCTATG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908016
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018212.1chromosomeCM018212.1:14875892..14876060 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:108761076..108761244 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold58089supercontigscaffold58089:427..603 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold2747_A11supercontigscaffold2747_A11:3960..4136 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:15378373..15378549 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:14873991..14874167 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:15092427..15092603 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:15491228..15491404 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold4349supercontigscaffold4349:255471..255637 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4349supercontigscaffold4349:259451..259619 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:13066753..13066898 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:14621730..14621898 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:14873497..14873665 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:15166862..15167038 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017711.1chromosomeCM017711.1:13045069..13045222 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:15108604..15108772 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:15637907..15638083 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:15958065..15958253 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:15546049..15546217 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_11chromosomeB_11:14393760..14393953 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:163691381..163691578 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908016DQ908016Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch11_At.11N/A163.36Gh074View
2CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch11_At.11N/A95.9GH74View
3TM-1 x Hai-7124, BC1 (2012)AD_ch11_At.11N/A41.9Gh74-165View
Sequence
>Gh074 ID=Gh074; Name=Gh074; organism=Gossypium hirsutum; type=genetic_marker; length=177bp
ACAGCCTATAATAAGATGCCACATGGCATTTAATATTTTTAATATTAAAT
TTAATTAAATTAAAATAAAAACTAATTTTACACTCTCTCTCCTGTCTCCT
CACACACACACACACACACTCTCTCTCTCTCTCTCTCTCTCACACACACA
CACCATAGCTTAAGTTTCTGGCTACTG