Gh065, Gh065 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh065
AliasGh65
Genbank IDDQ908007
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908007
Source Typegenomic
Repeat MotifTC(13)
Primer 1Gh065_F: TGTTTTGGCTGATTCTCTACTCT
Primer 2Gh065_R: CGGCCAAACAACAAAATG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A08chromosomeA08:41757856..41757982 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018209.1chromosomeCM018209.1:29350488..29350606 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:42541145..42541289 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr2chromosomeAt_chr2:4236614..4236740 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A08chromosomeA08:36741094..36741220 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:30426559..30426685 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:30539804..30539930 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:30870154..30870280 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:45701570..45701694 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At11chromosomeAt11:42839568..42839680 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5006supercontigscaffold5006:297865..297983 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5006supercontigscaffold5006:250887..250998 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4238supercontigscaffold4238:132152..132264 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3214supercontigscaffold3214:267665..267777 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold14909supercontigscaffold14909:141651..141764 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A04chromosomeGbar_A04:23311242..23311355 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A02chromosomeGbar_A02:66416963..66417075 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:30166246..30166364 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:30134818..30134929 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:29253969..29254087 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017617.1chromosomeCM017617.1:29551310..29551430 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017643.1chromosomeCM017643.1:31449005..31449123 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:29613707..29613825 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:31671416..31671542 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:33158840..33158964 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:40718007..40718151 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908007DQ908007Gossypium hirsutumsequence_feature


Sequence
>Gh065 ID=Gh065; Name=Gh065; organism=Gossypium hirsutum; type=genetic_marker; length=127bp
TGTTTTGGCTGATTCTCTACTCTTCTCTCTCTCTCTCTCTCTCTCTCTCA
AGATTTAGCCAAATACTCCTTTTTCTCTCTTCTGTTTCTCCCAATTATTT
TTCTCTCTTCATTTTGTTGTTTGGCCG