Gh063, Gh063 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh063
AliasGh63
Gh063=Gh094
Gh094
Genbank IDDQ908005
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908005
Source Typegenomic
Repeat MotifGA(11
Primer 1Gh063_F: CCTGAACAACTCATTCCGG
Primer 2Gh063_R: GTGAAGCAAGAAATAGAACGTAAAC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908005
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A12chromosomeA12:83251462..83251592 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018213.1chromosomeCM018213.1:80382123..80382251 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:21170828..21170956 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
A12chromosomeA12:69583944..69584074 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A12chromosomeGhir_A12:87904030..87904160 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A12chromosomeA12:88779577..88779707 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:86000973..86001103 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:83148537..83148667 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold14862supercontigscaffold14862:125799..125927 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A12chromosomeGbar_A12:82601415..82601541 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A12chromosomeA12:82106054..82106182 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A12chromosomeA12:82148656..82148782 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:83658115..83658243 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017647.1chromosomeCM017647.1:86854762..86854890 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017699.1chromosomeCM017699.1:82638026..82638154 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:82593983..82594111 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A12chromosomeA12:89370813..89370943 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:89430222..89430352 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:96742962..96743090 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908005DQ908005Gossypium hirsutumsequence_feature


Sequence
>Gh063 ID=Gh063; Name=Gh063; organism=Gossypium hirsutum; type=genetic_marker; length=131bp
CCTGAACAACTCATTCCGGAAAACTAAGAAAAGAGGAGAGAGAGAGAGAG
AGAGAGACTGTTGTTATATTTTACAAAAGAATTTATTTTTTTTCAAAATT
TTATAAGTTTACGTTCTATTTCTTGCTTCAC