Gh057, Gh057 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh057
AliasGh57
Genbank IDDQ907999
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ907999
Source Typegenomic
Repeat MotifCA(9)
Primer 1Gh057_F: CTGACTTCTGAGAACCTAATTTGC
Primer 2Gh057_R: AGTTTGCATATTCAGCATTTATTCC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ907999
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:55043883..55044059 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:53031984..53032158 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018208.1chromosomeCM018208.1:90836762..90836924 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:48517321..48517499 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_07chromosomeD10_07:3090158..3090346 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016620.1chromosomeCM016620.1:4991919..4992095 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr1chromosomeDt_chr1:84824950..84825112 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr9chromosomeAt_chr9:48581164..48581340 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:52190116..52190292 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A07chromosomeA07:75332228..75332390 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:56264458..56264634 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:94756249..94756411 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:94741752..94741914 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:55452119..55452295 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:93731034..93731196 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:55802197..55802373 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:93745573..93745735 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:52140005..52140181 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A07chromosomeA07:90262845..90263007 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At07chromosomeAt07:83701617..83701779 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At07chromosomeAt07:83713932..83714094 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold21040supercontigscaffold21040:101710..101872 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold21040supercontigscaffold21040:114025..114187 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold29611supercontigscaffold29611:47818..47992 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold29611supercontigscaffold29611:38332..38506 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D07chromosomeGbar_D07:53403139..53403313 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:89976317..89976479 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:89965021..89965183 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:54075887..54076061 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:92156266..92156428 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:53964127..53964301 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017616.1chromosomeCM017616.1:93821861..93822023 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:54960845..54961019 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017642.1chromosomeCM017642.1:96767659..96767821 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:54087499..54087673 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017694.1chromosomeCM017694.1:92168004..92168166 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:56394860..56395036 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A07chromosomeA07:95911079..95911241 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:97641305..97641467 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:2955558..2955736 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:79759769..79759933 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:52858503..52858677 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:42951237..42951415 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr01chromosomeChr01:52656902..52657078 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:39961616..39961790 +Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:31136270..31136438 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:38586769..38586943 +Gossypium lobatum (D7) genome ISU_v1n/a
E07chromosomeE07:4667394..4667563 -Gossypium stocksii (E1) genome NSF_v1n/a
F07chromosomeF07:79650914..79651085 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ907999DQ907999Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch16_Dt.07N/A131.8Gh057View
2Yumian-1 x 7235, RIL (2015)AD_ch16_Dt.07N/A27Gh057View
Sequence
>Gh057 ID=Gh057; Name=Gh057; organism=Gossypium hirsutum; type=genetic_marker; length=177bp
CTGACTTCTGAGAACCTAATTTGCAAAATGATTAGAACTTCAGATACAAA
ACCAATCAACATATCAAGGATGGACATGTTCTCCTTTGCAAAATAAAACA
TGCGATATTGCCTCACACCCACCAAGACACACACACACACACACAGAGGG
GAGGAATAAATGCTGAATATGCAAACT