Gh054, Gh054 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh054
AliasGh54
Genbank IDDQ907996
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ907996
Source Typegenomic
Repeat MotifGT(13)
Primer 1Gh054_F: CAATGATGGTGGCAATGTG
Primer 2Gh054_R: CTTTCCCACATTTCATCACAC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ907996
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:26584912..26585062 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:25137372..25137510 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Dt_chr11chromosomeDt_chr11:25175913..25176063 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold67159supercontigscaffold67159:425..575 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D10chromosomeD10:25337374..25337524 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:25329393..25329543 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:24631676..24631826 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:25491050..25491200 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:25457137..25457287 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At10chromosomeAt10:61440196..61440332 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6619supercontigscaffold6619:105429..105567 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6619supercontigscaffold6619:98017..98155 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold17355supercontigscaffold17355:145772..145908 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A10chromosomeGbar_A10:67692368..67692504 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D10chromosomeGbar_D10:25033789..25033927 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:25378052..25378188 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:25034307..25034463 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:25536663..25536810 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:25689731..25689867 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:25656106..25656256 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:40753358..40753486 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:21954564..21954794 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:18164018..18164219 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:15498837..15498967 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeGh054:5..482 .
Chr11:25068922..25069373 -		n/a
scaffold324supercontigGh054:5..482 .
scaffold324:470576..471027 -		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ907996DQ907996Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1GX1135 x VGX100-2, RIL (2016)AD_ch24_Dt.08N/A42.4Gh54View
Sequence
>Gh054 ID=Gh054; Name=Gh054; organism=Gossypium hirsutum; type=genetic_marker; length=151bp
CAATGATGGTGGCAATGTGAAAAAGCAAAGAGAGGAGAGAGAGAGAGAGA
GAGAGAGAGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTAGGAGTTGAGAA
AAAGCAAACGGAAAAAGAAAAACAAAGAAAGTGTGATGAAATGTGGGAAA
G