Gh053, Gh053 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh053
AliasGh53
Genbank IDDQ907995
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ907995
Source Typegenomic
Repeat MotifAG(13)
Primer 1Gh053_F: CCAGTTTCGCCTTCAGTCTA
Primer 2Gh053_R: GTTTCACCAATTCTTCCTCG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ907995
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A04chromosomeA04:275403..275534 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D05chromosomeD05:64020646..64020771 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018205.1chromosomeCM018205.1:490545..490678 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018219.1chromosomeCM018219.1:62147745..62147872 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:56503386..56503509 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
tig00007316_CRI-A2_v1.0.a1chromosometig00007316_CRI-A2_v1.0.a1:21314..21445 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:289901..290024 +Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold516.1supercontigscaffold516.1:278615..278746 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr9chromosomeDt_chr9:1487101..1487226 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr4chromosomeAt_chr4:23475812..23475943 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A04chromosomeA04:253630..253761 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D05chromosomeD05:61644100..61644225 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A04chromosomeGhir_A04:820235..820366 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D05chromosomeGhir_D05:62622911..62623036 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A04chromosomeA04:272087..272218 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:63653280..63653405 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:294994..295125 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:63827992..63828117 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:279861..279992 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D05chromosomeD05:62043791..62043916 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt05chromosomeDt05:60124700..60124827 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7897supercontigscaffold7897:30033..30166 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold26498supercontigscaffold26498:77761..77888 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A04chromosomeGbar_A04:501508..501639 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A04chromosomeA04:436087..436220 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D05chromosomeD05:66228533..66228660 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017613.1chromosomeCM017613.1:459651..459782 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017627.1chromosomeCM017627.1:62395811..62395936 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017639.1chromosomeCM017639.1:436901..437034 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017653.1chromosomeCM017653.1:65558649..65558774 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017691.1chromosomeCM017691.1:529566..529699 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017705.1chromosomeCM017705.1:63340734..63340861 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A04chromosomeA04:254554..254685 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D05chromosomeD05:66181082..66181207 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:94574899..94575032 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:96962382..96962511 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:56873493..56873616 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:12963347..12963474 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:57933897..57934022 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:54793877..54794000 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:52191350..52191471 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:62800625..62800750 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:42547737..42547860 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:53587831..53587952 -Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:100658781..100658912 +Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:76083912..76084065 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr09chromosomeGh053:1..545 .
Chr09:70413987..70414523 -		n/a
Chr10chromosomeGh053:1..545 .
Chr10:47120209..47120745 +		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ907995DQ907995Gossypium hirsutumsequence_feature


Sequence
>Gh053 ID=Gh053; Name=Gh053; organism=Gossypium hirsutum; type=genetic_marker; length=132bp
CCAGTTTCGCCTTCAGTCTAAAGCACACTGTTGTTCTGTCTGAAAGGAGC
CAAGGATGTTGGTCTTGGTTTATGCCAGAGAGAGAGAGAGAGAGAGAGAG
AGAAAGAGATAACGAGGAAGAATTGGTGAAAC