Gh045, Gh045 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh045
AliasGh45
Genbank IDDQ907988
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ907988
Source Typegenomic
Repeat MotifA(16)
Primer 1Gh045_F: GAGTTTACTTTATGGAAAATTATGGGAAAAG
Primer 2Gh045_R: CTCCCGAGGGTAACTTATCTTTTTTAAG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ907988
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A06chromosomeA06:35666712..35666816 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018207.1chromosomeCM018207.1:34455168..34455273 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:38062352..38062458 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:40278927..40279032 +Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr10chromosomeAt_chr10:4052923..4053030 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A06chromosomeA06:33615525..33615632 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Scaffold2086supercontigScaffold2086:12065..12170 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A06chromosomeA06:35394477..35394584 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:35639714..35639821 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:35488529..35488636 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At06chromosomeAt06:31659686..31659791 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9495supercontigscaffold9495:71568..71673 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A06chromosomeGbar_A06:34209709..34209813 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A06chromosomeA06:34429400..34429505 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017615.1chromosomeCM017615.1:35494854..35494963 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017641.1chromosomeCM017641.1:36658889..36658989 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017693.1chromosomeCM017693.1:34924981..34925085 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A06chromosomeA06:36522550..36522657 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:37654712..37654814 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:39020566..39020670 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr_10chromosomeChr_10:16919050..16919230 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ907988DQ907988Gossypium hirsutumsequence_feature


Sequence
>Gh045 ID=Gh045; Name=Gh045; organism=Gossypium hirsutum; type=genetic_marker; length=107bp
GAGTTTACTTTATGGAAAATTATGGGAAAAGAACAAAATTCTTCCGTAAA
AAAAAAAAAAAAACACACACACACACACACTTAAAAAAGATAAGTTACCC
TCGGGAG