Gh043, Gh043 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh043
AliasGh43
Genbank IDDQ907986
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ907986
Source Typegenomic
Repeat MotifA(8)
Primer 1Gh043_F: GTCACACAACACTAGACATAAACCC
Primer 2Gh043_R: CTTTTGAACATTTTAATGAGAATTTATGG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ907986
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A06chromosomeA06:63271599..63271658 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018207.1chromosomeCM018207.1:62647905..62647966 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
At_chr10chromosomeAt_chr10:89678203..89678264 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold1512_A06supercontigscaffold1512_A06:6760..6821 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A06chromosomeGhir_A06:53346885..53346946 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A06chromosomeA06:52479052..52479113 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:52525636..52525697 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:52037996..52038057 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold271supercontigscaffold271:88564..88625 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold271supercontigscaffold271:86097..86158 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A06chromosomeGbar_A06:62025669..62025730 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A06chromosomeA06:50386723..50386784 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017615.1chromosomeCM017615.1:66483461..66483522 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:64471851..64471912 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A06chromosomeA06:69004850..69004911 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ907986DQ907986Gossypium hirsutumsequence_feature


Sequence
>Gh043 ID=Gh043; Name=Gh043; organism=Gossypium hirsutum; type=genetic_marker; length=62bp
GTCACACAACACTAGACATAAACCCAAAAAAAACCATAAATTCTCATTAA
AATGTTCAAAAG