Gh040, Gh040 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh040
AliasGh40
Genbank IDDQ907984
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ907984
Source Typegenomic
Repeat MotifCT(9)
Primer 1Gh040_F: GAACCACCACACTACCTCAGACTAGAC
Primer 2Gh040_R: CCAAAAGGCATCTGTTTAGAATCTG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ907984
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A04chromosomeA04:75815285..75815362 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018205.1chromosomeCM018205.1:74375415..74375492 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:6718093..6718172 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016617.1chromosomeCM016617.1:119396925..119397000 +Gossypium australe (G2) genome CRI_v1.1n/a
A04chromosomeA04:56961827..56961904 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A04chromosomeGhir_A04:77951566..77951643 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A04chromosomeA04:80808905..80808982 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:78100245..78100322 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:73720454..73720531 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold5976supercontigscaffold5976:50440..50517 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5976supercontigscaffold5976:47327..47404 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1802supercontigscaffold1802:39696..39775 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A04chromosomeGbar_A04:74727468..74727545 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A04chromosomeA04:75278764..75278841 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017613.1chromosomeCM017613.1:76800874..76800951 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017639.1chromosomeCM017639.1:85189580..85189659 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017691.1chromosomeCM017691.1:75102126..75102203 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A04chromosomeA04:81732023..81732100 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:101625846..101625923 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:103506318..103506399 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
chr12chromosomechr12:24767487..24767667 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr12chromosomeChr12:17905645..17905816 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr12chromosomeChr12:21828120..21828195 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr04chromosomeChr04:165979996..165980069 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ907984DQ907984Gossypium hirsutumsequence_feature


Sequence
>Gh040 ID=Gh040; Name=Gh040; organism=Gossypium hirsutum; type=genetic_marker; length=78bp
GAACCACCACACTACCTCAGACTAGACCTCTCTCTCTCTCTCTCTATCTC
TATCAGATTCTAAACAGATGCCTTTTGG