DPL0741, DPL0741 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0741
Genbank IDGQ395142
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceGQ395142
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0741_F: GAAATCTTATCACATACCACGGTTC
Primer 2DPL0741_R: CGAAGGGTCTCAACTTATTCTCAC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ395142
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:47510802..47510917 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A13chromosomeA13:85370919..85371044 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018214.1chromosomeCM018214.1:89648868..89648996 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:42655032..42655156 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_13chromosomeD5_13:42627949..42628072 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:103366186..103366301 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:44917008..44917144 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr13chromosomeDt_chr13:17941901..17942016 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr7chromosomeDt_chr7:29921881..29922006 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A13chromosomeA13:61976579..61976704 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A13chromosomeGhir_A13:89050605..89050730 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
scaffold20552_objsupercontigscaffold20552_obj:562..677 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
scaffold20551_objsupercontigscaffold20551_obj:562..677 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:48007960..48008075 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:91996168..91996293 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:46851112..46851227 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:46922301..46922416 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:90101325..90101450 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:88790903..88791028 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt13chromosomeDt13:45494153..45494286 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold13971supercontigscaffold13971:16204..16337 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6134supercontigscaffold6134:402656..402784 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold20825supercontigscaffold20825:186086..186201 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D13chromosomeGbar_D13:43439651..43439766 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:90957323..90957451 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A13chromosomeA13:93902986..93903102 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:91449766..91449897 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:47864162..47864283 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:96280719..96280844 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:44769059..44769174 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017700.1chromosomeCM017700.1:91763733..91763864 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A13chromosomeA13:92363594..92363719 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:97256756..97256892 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:101498205..101498320 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:42658722..42658846 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr_13chromosomeChr_13:30481762..30481883 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:46327356..46327471 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:29764438..29764747 +Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:23200333..23200445 +Gossypium gossypioides (D6) genome ISU_v1n/a
F13chromosomeF13:77510533..77510642 +Gossypium longicalyx (F1) genome NSF_v1n/a
F13chromosomeF13:77517879..77518027 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ395142GQ395142Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1DH962 X Ji Mian 5, F2 (2015)AD_ch25_Dt.06N/A69.3MON_DPL0741View
2CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch18_Dt.13N/A63.6DPL0741View
Sequence
>DPL0741 ID=DPL0741; Name=DPL0741; organism=Gossypium hirsutum; type=genetic_marker; length=113bp
GAAATCTTATCACATACCACGGTTCTTAATAAAATAAAACAGAAACAACA
ACAACAACAACAATAATAATGGTACTAAAAATATTAAAGGTGAGAATAAG
TTGAGACCCTTCG