DPL0697, DPL0697 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0697
Genbank IDGQ395120
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceGQ395120
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0697_F: ACTGTGTTGACAATAAAGCCCATC
Primer 2DPL0697_R: GGACAGCGGTTGAAACACTATT
PolymorphismP_ DPL0697
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ395120
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A09chromosomeA09:13096684..13096912 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A08chromosomeA08:90775849..90776062 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018210.1chromosomeCM018210.1:12271345..12271572 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:86060570..86060783 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:13855351..13855577 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold141.1supercontigscaffold141.1:347248..347461 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr13chromosomeAt_chr13:4149042..4149270 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A09chromosomeA09:12476524..12476752 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:71709672..71709885 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:27912747..27912951 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:13347037..13347265 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:52825336..52825532 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D06chromosomeGhir_D06:15458415..15458633 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A09chromosomeA09:12865178..12865406 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:92906203..92906416 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:13236409..13236637 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:92433177..92433390 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:13480815..13481043 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At08chromosomeAt08:74812186..74812399 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At06chromosomeAt06:53484665..53484861 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At06chromosomeAt06:53481236..53481432 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At04chromosomeAt04:56250179..56250375 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9824supercontigscaffold9824:13393..13606 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold416supercontigscaffold416:198864..199060 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold416supercontigscaffold416:195435..195631 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3913supercontigscaffold3913:111400..111596 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9027supercontigscaffold9027:21560..21768 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9027supercontigscaffold9027:16249..16457 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5358supercontigscaffold5358:313231..313458 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5358supercontigscaffold5358:312241..312468 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5358supercontigscaffold5358:309684..309911 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D06chromosomeGbar_D06:35418560..35418762 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D01chromosomeGbar_D01:27664508..27664716 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:12595783..12596010 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:86985202..86985415 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:59172590..59172788 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A04chromosomeGbar_A04:72575875..72576071 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:62336075..62336271 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A09chromosomeA09:12937155..12937382 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017618.1chromosomeCM017618.1:12981828..12982053 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017644.1chromosomeCM017644.1:12364755..12364971 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017696.1chromosomeCM017696.1:13068150..13068376 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A09chromosomeA09:13479491..13479719 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:93949353..93949566 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:13252709..13252935 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:14599900..14600126 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr_05chromosomeChr_05:24984566..24984927 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:22616647..22616855 +Gossypium gossypioides (D6) genome ISU_v1n/a
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ395120GQ395120Gossypium hirsutumsequence_feature


Sequence
>DPL0697 ID=DPL0697; Name=DPL0697; organism=Gossypium hirsutum; type=genetic_marker; length=224bp
ACTGTGTTGACAATAAAGCCCATCTGCGTCGACAATGGTACCTAATTTTT
CTGCAAAAAGAAGAAGAAGAAGAAGAAGTAAAACAAACTTGAAATAAAAC
ATAAAACAAAACAAAATAAAATCACATAATGATAAATTCAATAAAAAATA
AATTTTTTGACCAATTTAATGGTCTTTGCCTGCTTTTGATTAATATTCCC
AAAATAGTGTTTCAACCGCTGTCC