CIR0404, CIR0404 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0404
AliasCIR404
Genbank IDAJ567328
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567328
Source Typegenomic
Repeat Motif(TG)7
PCR ConditionAnnealing temperature: 46
Primer 1CIR404_F: TAGTTCGAGAAGAAAGTC
Primer 2CIR404_R: ATGTCTTAGGCACACA
Product Length223
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567328
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A07chromosomeA07:63838438..63838660 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018208.1chromosomeCM018208.1:54379630..54379852 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:54336484..54336706 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr7chromosomeAt_chr7:22221974..22222196 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A07chromosomeA07:56265608..56265830 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A07chromosomeGhir_A07:56974786..56975008 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A07chromosomeA07:56058014..56058236 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:57165833..57166055 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:55501019..55501241 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold1402supercontigscaffold1402:240538..240760 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A07chromosomeGbar_A07:54061049..54061271 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A07chromosomeA07:54680794..54681016 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017616.1chromosomeCM017616.1:56326249..56326471 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017642.1chromosomeCM017642.1:57042629..57042851 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017694.1chromosomeCM017694.1:55067827..55068049 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A07chromosomeA07:58149297..58149519 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:58491041..58491263 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:56870703..56870925 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:37756811..37757028 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr01chromosomeChr01:26876892..26877112 +Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:26291676..26291896 +Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567328AJ567328Gossypium hirsutumsequence_feature


Sequence
>CIR0404 ID=CIR0404; Name=CIR0404; organism=Gossypium hirsutum; type=genetic_marker; length=223bp
TAGTTCGAGAAGAAAGTCCGAGTTTGGAGTTTCGAGCTATAGTAGGTGAG
TCCTTAATATCGACTCCTACTAGTGGTGCATGAGTACTTGAGTGATTGCT
GAAAATTTATACATATGTGTGTAGTCTTGGTATAGTGTCCTTGTGGGTCA
AGTATGTAAATAATTGTATGTATGGGTGCATGTGATTCTGAGAAGCAATT
GTGTGTGTGTGTGCCTAAGACAT