CIR0387, CIR0387 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0387
AliasCIR387
Genbank IDAJ567314
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567314
Source Typegenomic
Repeat Motif(AT)6(GT)8
PCR ConditionAnnealing temperature: 51
Primer 1CIR387_F: CAAAGACCCAAATCAAA
Primer 2CIR387_R: TGGCAGCACTAAATACC
Product Length140
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567314
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A01chromosomeA01:769639..769780 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018202.1chromosomeCM018202.1:512756..512897 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:578245..578389 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold944.1supercontigscaffold944.1:501940..502081 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:633017..633158 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:681505..681644 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:649467..649608 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:698313..698454 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:676392..676533 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold23924supercontigscaffold23924:237829..237970 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold23924supercontigscaffold23924:233028..233169 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A01chromosomeGbar_A01:487291..487432 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:578950..579091 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:613178..613317 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:554982..555123 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:613186..613327 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:702838..702979 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:514585..514725 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:511118..511262 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_01chromosomeB_01:584374..584526 -Gossypium anomalum (B1) genome NSF_v1n/a
F01chromosomeF01:544816..544946 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr8chromosomeCIR0387:1..165 .
Chr8:21940591..21940734 +		n/a
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567314AJ567314Gossypium hirsutumsequence_feature


Sequence
>CIR0387 ID=CIR0387; Name=CIR0387; organism=Gossypium hirsutum; type=genetic_marker; length=140bp
CAAAGACCCAAATCAAAAAACCCTAAAATACATACATACATTCATCTGTG
CATATATATATATGTGTGTGNGTGTGTGTATGTAAAGTTGAAAGAGAGAA
ATTACCAGAGCAAGTTCTAGTACGGTATTTAGTGCTGCCA