CIR0379, CIR0379 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	CIR0379
Alias	CIR379
Genbank ID	AJ567307
Type	SSR
Species	Gossypium hirsutum
Germplasm	Guazuncho-2
Source Sequence	AJ567307
Source Type	genomic
Repeat Motif	(TG)12(N)1(GA)6
PCR Condition	Annealing temperature: 51
Primer 1	CIR379_F: CCCAAGGAGAACAATAAA
Primer 2	CIR379_R: TAAGCTGTGGCTAATGAA
Product Length	187
Publication	[view all]
Comment	Primer data obtained in 2005

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	AJ567307

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
D11	chromosome	D11:8989275..8989459 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
At_chr7	chromosome	At_chr7:9403615..9403799 -	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
D11	chromosome	D11:8970450..8970634 -	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
D11	chromosome	D11:8666068..8666252 -	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
D11	chromosome	D11:8850690..8850874 -	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1	n/a
D11	chromosome	D11:8788172..8788356 -	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
CM017633.1	chromosome	CM017633.1:8589122..8589312 -	Gossypium tomentosum (AD3) genome HGS_v1.1	n/a
CM017659.1	chromosome	CM017659.1:8914443..8914635 -	Gossypium mustelinum (AD4) genome JGI_v1.1	n/a
D11	chromosome	D11:9008681..9008865 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a
Chr07	chromosome	Chr07:8617620..8617824 -	Gossypium davidsonii (D3d-8) genome CRI_v1	n/a

Publications


Year	Publication
2004	Nguyen TB, Giband M, Brottier P, Risterucci AM, Lacape JM. Wide coverage of the tetraploid cotton genome using newly developed microsatellite markers. Theoretical and applied genetics. 2004 Jun; 109(1):167-75

Germplasm


Stock Name	Type
Guazuncho-2	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
AJ567307	AJ567307	Gossypium hirsutum	sequence_feature

Sequence

>CIR0379 ID=CIR0379; Name=CIR0379; organism=Gossypium hirsutum; type=genetic_marker; length=187bp
CCCAAGGAGAACAATAAAGCATGCACAAATTATTTAAGAGCAAAAAACAA
TTACAAAAGCACAAGTCTTCAGATATGTGTTGTGTGTGTGTGTGTGTGTG
TGTGTAAGAGAGAGAGAGATGATAAACAATTTAAATACAAAATTTTAACT
GGATATCTTAGCATAGGCATTCATTAGCCACAGCTTA

Search form

CIR0379, CIR0379 (genetic_marker) Gossypium hirsutum