CIR0371, CIR0371 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0371
AliasCIR371
Genbank IDAJ567301
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567301
Source Typegenomic
Repeat Motif(CA)5
PCR ConditionAnnealing temperature: 51
Primer 1CIR371_F: GAAGATTTGGAGGGG
Primer 2CIR371_R: TGAATCAGAGATTGTTCAG
Product Length137
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567301
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A05chromosomeA05:25967552..25967687 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018206.1chromosomeCM018206.1:25501542..25501679 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:25367593..25367731 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr9chromosomeAt_chr9:37682607..37682742 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold1204_A05supercontigscaffold1204_A05:109480..109615 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:24783381..24783516 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:25604098..25604233 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
Scaffold91supercontigScaffold91:151274..151411 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:25288213..25288350 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:25221768..25221904 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:25525596..25525732 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:24884278..24884415 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:26027055..26027190 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:26793135..26793271 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:25614681..25614819 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_05chromosomeB_05:60765168..60765304 +Gossypium anomalum (B1) genome NSF_v1n/a
F05chromosomeF05:22111607..22111742 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567301AJ567301Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch05_At.05N/A121.4CIR371View
2AD-genome wide Reference Map (2009)AD_ch05_At.05N/A149cir0371View
Sequence
>CIR0371 ID=CIR0371; Name=CIR0371; organism=Gossypium hirsutum; type=genetic_marker; length=137bp
GAAGATTTGGAGGGGGTTGANTTGTGGTTTGANACGTATAAANAAAAATC
AAGGCAGGCTAAGGCTAAGGGATANGGCAAACAAGATTGTGAACNCGCAC
ACACACACTANGCTCTANCTGAACAATCTCTGATTCA