CIR0355, CIR0355 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0355
AliasCIR355
Genbank IDAJ567290
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567290
Source Typegenomic
Repeat Motif(CA)5
PCR ConditionAnnealing temperature: 51
Primer 1CIR355_F: CAAGCTAATCCTCAACTAAA
Primer 2CIR355_R: TTGATTCCCATTCACAC
Product Length169
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567290
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:49574175..49574337 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:47867149..47867311 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:44100685..44100846 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_07chromosomeD10_07:8481672..8481833 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr1chromosomeDt_chr1:83218429..83218589 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:46836258..46836420 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:51040696..51040858 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:50321487..50321649 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:50496100..50496262 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:46970753..46970915 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt07chromosomeDt07:51695072..51695234 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4332supercontigscaffold4332:1300..1462 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8989supercontigscaffold8989:103717..103878 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8989supercontigscaffold8989:100308..100469 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D07chromosomeGbar_D07:48135160..48135322 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:48974128..48974290 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:48657377..48657539 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:49646913..49647074 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:48791558..48791720 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:51036533..51036695 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:8203489..8203650 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr01chromosomeChr01:47678392..47678553 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:36229441..36229602 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:31464771..31464932 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:33275803..33275964 +Gossypium aridum (D4) genome ISU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567290AJ567290Gossypium hirsutumsequence_feature


Sequence
>CIR0355 ID=CIR0355; Name=CIR0355; organism=Gossypium hirsutum; type=genetic_marker; length=169bp
CAAGCTAATCCTCAACTAAAACTTGGAGCTTAGCTTTAATCACACACACA
CGCACATATGTGATACAAATTGGATGTAAACTTTGAGTGATGAATTATGT
GTGGTGAACAGTAGCTTTGTCTGACTCCACAGCTACACCAATGGCAAACC
ATGTGTGAATGGGAATCAA