CIR0351, CIR0351 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0351
AliasCIR351
Genbank IDAJ567287
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567287
Source Typegenomic
Repeat Motif(AC)7
PCR ConditionAnnealing temperature: 55
Primer 1CIR351_F: TCCCGGTAGCTTCG
Primer 2CIR351_R: GTTGGTGTATGGATTTGG
Product Length154
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567287
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:2543865..2544018 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:1828436..1828589 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:1797150..1797299 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D08chromosomeD08:1913668..1913821 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:1954897..1955050 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:1817265..1817418 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:1911269..1911422 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:1975550..1975703 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold28111supercontigscaffold28111:590..743 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold21149supercontigscaffold21149:30119..30272 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:1819009..1819162 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:1764479..1764632 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:1848235..1848388 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:1955242..1955395 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:1816901..1817054 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:1928486..1928639 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:1782222..1782371 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr04chromosomeChr04:1813586..1813734 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr04chromosomeChr04:1873767..1873915 -Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:1447091..1447239 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr04chromosomeChr04:1669858..1670006 -Gossypium lobatum (D7) genome ISU_v1n/a
Chr04chromosomeCIR0351:1..275 .
Chr04:1802095..1802365 -		n/a
scaffold229supercontigCIR0351:1..275 .
scaffold229:596628..596898 -		n/a
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567287AJ567287Gossypium hirsutumsequence_feature


Sequence
>CIR0351 ID=CIR0351; Name=CIR0351; organism=Gossypium hirsutum; type=genetic_marker; length=154bp
TCCCGGTAGCTTCGATATCTATAAAACAATGCAACACACACACACACAAA
GTAAGCTTCCAAGAGCTTAGTAAGCCATATACAAATAAACTTATCATCAA
AGCAAATATACATCATATCACACATGTATTCCATAGCCAAATCCATACAC
CAAC