CIR0321, CIR0321 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0321
AliasCIR321
Genbank IDAJ567261
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567261
Source Typegenomic
Repeat Motif(CA)6
PCR ConditionAnnealing temperature: 46
Primer 1CIR321_F: GCAGTTGCACGATA
Primer 2CIR321_R: CTGTTTCTCTCTGTTGTT
Product Length235
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567261
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A05chromosomeA05:71795068..71795298 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018206.1chromosomeCM018206.1:59089552..59089782 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_05chromosomeKI_05:38956139..38956353 +Gossypioides kirkii genome ISU_v3n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:81679117..81679345 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr9chromosomeAt_chr9:20407250..20407480 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:65071356..65071586 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:63807166..63807396 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:65130788..65131018 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:63919119..63919349 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:62904836..62905066 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At05chromosomeAt05:64020595..64020825 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold32217supercontigscaffold32217:4237..4467 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A05chromosomeGbar_A05:59636886..59637116 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:62185599..62185829 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:61101630..61101859 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:64476463..64476692 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:61368425..61368655 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:65638453..65638683 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:81705329..81705558 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_05chromosomeB_05:24280983..24281213 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:45591663..45591894 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr05chromosomeChr05:29566378..29566607 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567261AJ567261Gossypium hirsutumsequence_feature


Sequence
>CIR0321 ID=CIR0321; Name=CIR0321; organism=Gossypium hirsutum; type=genetic_marker; length=235bp
GCAGTTGCACGATATATGTACGATATATAGACACGCACACACACACATAC
AGAACCGCGGAAAATATTGAGAAAATGCAAGTAAATGCGAAATGGAAAAT
CCTAAATAAAACAAACATATAAACAAGGAAAAAAAAGAATCTTCAAATTT
ACTAATAAAAACGAATTACTTTCGACATTTTCTATTTAAGTTGAAGCATA
AAAATAATTTAGTTTTTAACAACAGAGAGAAACAG