CIR0281, CIR0281 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0281
AliasCIR281
Genbank IDAJ567225
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567225
Source Typegenomic
Repeat Motif(CA)6
PCR ConditionAnnealing temperature: 51
Primer 1CIR281_F: TATCACATGGGTTTAGC
Primer 2CIR281_R: CTGTGTTATTTGTCGTGT
Product Length64
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567225
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A06chromosomeA06:109501777..109501841 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018207.1chromosomeCM018207.1:104666566..104666630 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:117622876..117622940 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr10chromosomeAt_chr10:30035754..30035818 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A06chromosomeA06:92856325..92856389 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A06chromosomeGhir_A06:112038728..112038792 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A06chromosomeA06:115079476..115079540 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:113949687..113949751 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:109843327..109843391 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold2096supercontigscaffold2096:87616..87680 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A06chromosomeGbar_A06:103528499..103528563 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A06chromosomeA06:106775079..106775143 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017615.1chromosomeCM017615.1:109715541..109715605 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017641.1chromosomeCM017641.1:114741427..114741491 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017693.1chromosomeCM017693.1:108044126..108044190 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A06chromosomeA06:116125548..116125612 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:115099543..115099606 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:117262672..117262736 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567225AJ567225Gossypium hirsutumsequence_feature


Sequence
>CIR0281 ID=CIR0281; Name=CIR0281; organism=Gossypium hirsutum; type=genetic_marker; length=64bp
TATCACATGGGTTTAGCTCACACACACACACGAGTTTAGCTTTATCACAC
GACAAATAACACAG