CIR0276, CIR0276 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	CIR0276
Alias	CIR276
Genbank ID	AJ567220
Type	SSR
Species	Gossypium hirsutum
Germplasm	Guazuncho-2
Source Sequence	AJ567220
Source Type	genomic
Repeat Motif	(CA)6
PCR Condition	Annealing temperature: 55
Primer 1	CIR276_F: AAATATCAGGTAGACACACG
Primer 2	CIR276_R: GCCAACCAATCTTACTTT
Product Length	142
Publication	[view all]
Comment	Primer data obtained in 2005

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	AJ567220

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
A05	chromosome	A05:97271179..97271320 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
CM018206.1	chromosome	CM018206.1:99201892..99202033 -	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1	n/a
A05	chromosome	A05:88977953..88978094 -	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
Ghir_A05	chromosome	Ghir_A05:105971821..105971962 -	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
A05	chromosome	A05:107531524..107531665 -	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
A05	chromosome	A05:106075503..106075644 -	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1	n/a
A05	chromosome	A05:104029187..104029328 -	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
scaffold11893	supercontig	scaffold11893:336374..336515 +	Gossypium barbadense (AD2) '3-79' genome HAU_v1	n/a
Gbar_A05	chromosome	Gbar_A05:99297457..99297598 -	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
A05	chromosome	A05:104183269..104183410 -	Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1	n/a
CM017614.1	chromosome	CM017614.1:101630338..101630479 -	Gossypium tomentosum (AD3) genome HGS_v1.1	n/a
CM017640.1	chromosome	CM017640.1:110125460..110125601 -	Gossypium mustelinum (AD4) genome JGI_v1.1	n/a
CM017692.1	chromosome	CM017692.1:102146381..102146522 -	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
A05	chromosome	A05:107847688..107847829 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a

Publications


Year	Publication
2004	Nguyen TB, Giband M, Brottier P, Risterucci AM, Lacape JM. Wide coverage of the tetraploid cotton genome using newly developed microsatellite markers. Theoretical and applied genetics. 2004 Jun; 109(1):167-75

Germplasm


Stock Name	Type
Guazuncho-2	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
AJ567220	AJ567220	Gossypium hirsutum	sequence_feature

Sequence

>CIR0276 ID=CIR0276; Name=CIR0276; organism=Gossypium hirsutum; type=genetic_marker; length=142bp
AAATATCAGGTAGACACACGCACACACACACAAACATCCTGAGTAGGAAA
GCTGTTATTTATTGTGTTATTATTGGAACCCACCCGTTGTTTGAAAAGCC
AAAAAGGGTGGGCACCGAAAGTAGAAAGTAAGATTGGTTGGC

Search form

CIR0276, CIR0276 (genetic_marker) Gossypium hirsutum