CIR0266, CIR0266 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0266
AliasCIR266
Genbank IDAJ567210
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567210
Source Typegenomic
Repeat Motif(AC)7
PCR ConditionAnnealing temperature: 55
Primer 1CIR266_F: AGTTCTGCATTCTATGGTT
Primer 2CIR266_R: CAGTGTCGTGTCATCTTT
Product Length350
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567210
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:10548395..10548745 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:9956213..9956563 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:9731238..9731584 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_13chromosomeD10_13:10019151..10019503 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr13chromosomeDt_chr13:49167432..49167782 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:10153187..10153537 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:10139437..10139787 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:9886338..9886688 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:10362904..10363254 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:10034076..10034426 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold952supercontigscaffold952:34683..35033 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D13chromosomeGbar_D13:9735825..9736175 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:9614035..9614385 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:9879066..9879418 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:10462722..10463072 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:9984184..9984534 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:10532456..10532806 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:9644442..9644790 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr13chromosomeChr13:10264647..10264998 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr13chromosomeChr13:8775601..8775950 +Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:8577358..8577707 +Gossypium lobatum (D7) genome ISU_v1n/a
E13chromosomeE13:14730324..14730689 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr13chromosomeCIR0266:1..387 .
Chr13:9746319..9746704 +		n/a
Chr13chromosomeCIR0266:1..387 .
Chr13:29591120..29591505 +		n/a
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567210AJ567210Gossypium hirsutumsequence_feature


Sequence
>CIR0266 ID=CIR0266; Name=CIR0266; organism=Gossypium hirsutum; type=genetic_marker; length=350bp
AGTTCTGCATTCTATGGTTACATCTAATCAAGGGGTGTGTTTTTTGAATG
ATGTGGATTTTCTAACTATATAATAAGCTATCATTATTTTAATTTTTTTG
CTACTTTTTATGCCTTTTAAGGTTTAAACACACACACACACATGCACCGA
TATGAAAGTATTGGGATAAAATGCATTTTACATTACTTTGTCACTTGGTA
TTATACAATTCCGCTGCTAATGCTTGCCAATTCTTTCAGGTTGCAGATGT
AAAAAAGAACATAGAAACTGTTCAAGGGGCAGATGTTTATCCTGCTGCAC
AACAAATGCTTATCTATAAGGGAAAAGTCCTTAAAGATGACACGACACTG