CIR0248, CIR0248 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0248
AliasCIR248
Genbank IDAJ567193
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567193
Source Typegenomic
Repeat Motif(TG)7
PCR ConditionAnnealing temperature: 55
Primer 1CIR248_F: AAATTCCTCTTGTTGGAG
Primer 2CIR248_R: ACCTCTCTTCTAGTTATACACG
Product Length83
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567193
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A13chromosomeA13:64677809..64677891 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018214.1chromosomeCM018214.1:69764897..69764979 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_13chromosomeKI_13:25384966..25385044 -Gossypioides kirkii genome ISU_v3n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:79853075..79853157 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016626.1chromosomeCM016626.1:104231903..104231987 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr13chromosomeAt_chr13:31786288..31786370 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A13chromosomeA13:42552146..42552228 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A13chromosomeGhir_A13:68718654..68718736 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A13chromosomeA13:71736202..71736284 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:69611451..69611533 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:68322094..68322176 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A13chromosomeGbar_A13:64800908..64800990 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A13chromosomeA13:73973871..73973953 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:71679337..71679419 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017648.1chromosomeCM017648.1:74413747..74413829 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017700.1chromosomeCM017700.1:72312286..72312368 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A13chromosomeA13:71756249..71756331 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:44956223..44956305 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:78962995..78963077 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:25075761..25075843 +Gossypium gossypioides (D6) genome ISU_v1n/a
E13chromosomeE13:71781266..71781346 -Gossypium stocksii (E1) genome NSF_v1n/a
F13chromosomeF13:59320828..59320906 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:71389051..71389131 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567193AJ567193Gossypium hirsutumsequence_feature


Sequence
>CIR0248 ID=CIR0248; Name=CIR0248; organism=Gossypium hirsutum; type=genetic_marker; length=83bp
AAATTCCTCTTGTTGGAGCTCTCCTAACTGCTAAATTTTTGCTCCTTTGT
GTGTGTGTGTGCGTGTATAACTAGAAGAGAGGT