CIR0206, CIR0206 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0206
AliasCIR206
Genbank IDAJ567152
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567152
Source Typegenomic
Repeat Motif(TG)4(N)1(GT)8
PCR ConditionAnnealing temperature: 55
Primer 1CIR206_F: GTGAATGTTATTTGGTGATG
Primer 2CIR206_R: AGGTAAGAGGGTGAAGGT
Product Length95
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567152
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:47329305..47329398 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:45002290..45002381 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Dt_chr6chromosomeDt_chr6:5481708..5481801 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold42615supercontigscaffold42615:651..744 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D09chromosomeD09:45131668..45131761 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:47123830..47123923 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:46532107..46532200 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:46859339..46859432 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:44957952..44958045 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold2786supercontigscaffold2786:189375..189466 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D09chromosomeGbar_D09:45705299..45705390 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:48209993..48210086 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:45941940..45942031 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:47409502..47409594 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:46571599..46571692 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:48603827..48603920 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
chr06chromosomechr06:37380890..37380985 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567152AJ567152Gossypium hirsutumsequence_feature


Sequence
>CIR0206 ID=CIR0206; Name=CIR0206; organism=Gossypium hirsutum; type=genetic_marker; length=95bp
GTGAATGTTATTTGGTGATGAATATTCATATGTGTGTGCGTGTGTGTGTG
TGTGTGAGTCAATTTTGAGGTTTTACGACCTTCACCCTCTTACCT